Chlorine in PDB 5cxc: Structure of YTM1 Bound to the C-Terminal Domain of ERB1 in P 65 2 2 Space Group

The structure of Structure of YTM1 Bound to the C-Terminal Domain of ERB1 in P 65 2 2 Space Group, PDB code: 5cxc was solved by M.Wegrecki, J.Bravo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.82 / 3.10
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	169.110, 169.110, 154.042, 90.00, 90.00, 120.00
R / Rfree (%)	19.4 / 23.9

The binding sites of Chlorine atom in the Structure of YTM1 Bound to the C-Terminal Domain of ERB1 in P 65 2 2 Space Group (pdb code 5cxc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of YTM1 Bound to the C-Terminal Domain of ERB1 in P 65 2 2 Space Group, PDB code: 5cxc:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Structure of YTM1 Bound to the C-Terminal Domain of ERB1 in P 65 2 2 Space Group


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of YTM1 Bound to the C-Terminal Domain of ERB1 in P 65 2 2 Space Group within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl501 b:98.7 occ:1.00 NH2 A:ARG414 3.2 87.9 1.0 NH2 A:ARG454 3.3 91.9 1.0 NH1 A:ARG454 4.0 0.2 1.0 CZ A:ARG454 4.1 99.1 1.0 CZ A:ARG414 4.5 76.3 1.0 O A:GLY386 4.7 83.8 1.0

Chlorine binding site 2 out of 2 in the Structure of YTM1 Bound to the C-Terminal Domain of ERB1 in P 65 2 2 Space Group


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of YTM1 Bound to the C-Terminal Domain of ERB1 in P 65 2 2 Space Group within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl901 b:93.5 occ:1.00 NH2 B:ARG450 3.4 98.2 1.0 CE B:LYS769 3.6 0.6 1.0 NH2 B:ARG798 3.6 88.0 1.0 CG B:LYS769 3.9 0.0 1.0 CZ B:ARG450 4.4 97.0 1.0 CD B:LYS769 4.4 0.4 1.0 NH1 B:ARG450 4.4 0.3 1.0 CZ B:ARG798 4.7 88.8 1.0 NZ B:LYS769 4.7 0.3 1.0 NH1 B:ARG798 4.8 83.7 1.0

M.Wegrecki, O.Rodriguez-Galan, J.De La Cruz, J.Bravo. The Structure of ERB1-YTM1 Complex Reveals the Functional Importance of A High-Affinity Binding Between Two Beta-Propellers During the Assembly of Large Ribosomal Subunits in Eukaryotes. Nucleic Acids Res. V. 43 11017 2015.
ISSN: ESSN 1362-4962
PubMed: 26476442
DOI: 10.1093/NAR/GKV1043