Chlorine in PDB 5cxp: X-Ray Crystallographic Protein Structure of the Glycoside Hydrolase Family 30 Subfamily 8 Xylanase, XYN30A, From Clostridium Acetobutylicum

The structure of X-Ray Crystallographic Protein Structure of the Glycoside Hydrolase Family 30 Subfamily 8 Xylanase, XYN30A, From Clostridium Acetobutylicum, PDB code: 5cxp was solved by F.J.St John, E.Pozharski, J.C.Hurlbert, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.77
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	81.483, 91.866, 141.251, 90.00, 90.00, 90.00
R / Rfree (%)	16.9 / 21

The structure of X-Ray Crystallographic Protein Structure of the Glycoside Hydrolase Family 30 Subfamily 8 Xylanase, XYN30A, From Clostridium Acetobutylicum also contains other interesting chemical elements:

Sodium

(Na)

7 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Chlorine atom in the X-Ray Crystallographic Protein Structure of the Glycoside Hydrolase Family 30 Subfamily 8 Xylanase, XYN30A, From Clostridium Acetobutylicum (pdb code 5cxp). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 16 binding sites of Chlorine where determined in the X-Ray Crystallographic Protein Structure of the Glycoside Hydrolase Family 30 Subfamily 8 Xylanase, XYN30A, From Clostridium Acetobutylicum, PDB code: 5cxp:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 16 in the X-Ray Crystallographic Protein Structure of the Glycoside Hydrolase Family 30 Subfamily 8 Xylanase, XYN30A, From Clostridium Acetobutylicum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Crystallographic Protein Structure of the Glycoside Hydrolase Family 30 Subfamily 8 Xylanase, XYN30A, From Clostridium Acetobutylicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl608 b:17.1 occ:1.00 O A:HOH949 3.1 13.4 1.0 O A:HOH988 3.2 20.0 1.0 O A:HOH960 3.3 16.1 1.0 NZ A:LYS104 3.5 10.3 0.5 O A:HOH890 3.6 6.7 0.5 CE A:LYS104 3.7 12.5 0.5 CE A:LYS104 3.8 10.6 0.5 CB A:ALA145 3.9 12.6 1.0 CG A:LYS104 4.0 12.3 0.5 CG A:LYS104 4.1 11.2 0.5 O A:ALA145 4.2 13.4 1.0 NA A:NA602 4.4 32.3 1.0 CD A:LYS104 4.5 12.4 0.5 CD A:LYS104 4.6 10.9 0.5 CA A:ALA145 4.7 12.1 1.0 N A:ALA145 4.8 11.1 1.0 C A:ALA145 4.8 13.3 1.0 O A:HOH1105 4.9 22.0 1.0 NZ A:LYS104 4.9 12.8 0.5

Chlorine binding site 2 out of 16 in the X-Ray Crystallographic Protein Structure of the Glycoside Hydrolase Family 30 Subfamily 8 Xylanase, XYN30A, From Clostridium Acetobutylicum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of X-Ray Crystallographic Protein Structure of the Glycoside Hydrolase Family 30 Subfamily 8 Xylanase, XYN30A, From Clostridium Acetobutylicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl609 b:17.7 occ:1.00 O A:HOH1154 3.0 35.2 1.0 O A:HOH1142 3.1 22.8 1.0 O A:HOH1120 3.2 46.3 1.0 OD1 A:ASN193 3.3 15.5 1.0 N A:PRO190 3.6 10.2 1.0 C A:ASP189 3.6 10.0 1.0 CA A:PRO190 3.7 10.1 1.0 CG A:PRO190 3.7 11.2 1.0 O A:ASP189 3.8 9.9 1.0 CB A:ASP189 3.8 11.7 1.0 CD A:PRO190 3.9 10.9 1.0 CG A:ASN193 4.2 11.5 1.0 CB A:PRO190 4.3 11.1 1.0 CA A:ASP189 4.3 10.7 1.0 CB A:ASN193 4.4 11.6 1.0 O A:HOH950 4.7 21.3 1.0 O A:HOH798 4.8 19.5 1.0 O A:HOH1048 4.9 31.5 1.0 C A:PRO190 5.0 10.6 1.0 CG A:ASP189 5.0 12.8 1.0

Chlorine binding site 3 out of 16 in the X-Ray Crystallographic Protein Structure of the Glycoside Hydrolase Family 30 Subfamily 8 Xylanase, XYN30A, From Clostridium Acetobutylicum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of X-Ray Crystallographic Protein Structure of the Glycoside Hydrolase Family 30 Subfamily 8 Xylanase, XYN30A, From Clostridium Acetobutylicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl610 b:18.1 occ:1.00 O A:HOH821 3.2 18.6 1.0 O A:HOH892 3.2 11.1 1.0 N A:GLN156 3.5 10.9 1.0 N A:ALA155 3.7 9.6 1.0 CG A:GLN156 3.7 15.3 0.6 CB A:THR154 3.7 9.9 1.0 CB A:GLN156 4.0 11.3 0.4 CB A:GLN156 4.0 13.4 0.6 CB A:ALA155 4.0 10.1 1.0 OG1 A:THR154 4.1 9.3 1.0 CA A:ALA155 4.2 10.2 1.0 C A:ALA155 4.3 10.6 1.0 CA A:GLN156 4.3 11.0 0.4 CA A:GLN156 4.4 11.7 0.6 C A:THR154 4.4 9.5 1.0 CA A:THR154 4.6 9.8 1.0 CG2 A:THR154 4.6 10.4 1.0 O A:HOH882 4.8 12.2 1.0 CD A:GLN156 4.8 16.6 0.6 NE2 A:GLN156 4.9 15.5 0.6 O A:HOH1131 5.0 29.2 1.0

Chlorine binding site 4 out of 16 in the X-Ray Crystallographic Protein Structure of the Glycoside Hydrolase Family 30 Subfamily 8 Xylanase, XYN30A, From Clostridium Acetobutylicum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of X-Ray Crystallographic Protein Structure of the Glycoside Hydrolase Family 30 Subfamily 8 Xylanase, XYN30A, From Clostridium Acetobutylicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl611 b:15.8 occ:0.50 O A:HOH1077 3.1 19.7 1.0 N A:ALA379 3.3 14.7 1.0 CG A:PRO333 3.5 19.8 1.0 CB A:ALA379 3.8 15.1 1.0 CB A:PRO378 3.8 14.0 1.0 CD A:PRO333 4.0 19.4 1.0 CA A:PRO378 4.0 13.7 1.0 C A:PRO378 4.1 14.8 1.0 CA A:ALA379 4.1 14.1 1.0 O A:ALA379 4.7 12.2 1.0 CB A:PRO333 4.7 18.3 1.0 N A:PRO333 4.7 19.8 1.0 O A:HOH933 4.8 7.8 1.0 C A:ALA379 4.9 13.1 1.0 CG A:PRO378 5.0 13.9 1.0

Chlorine binding site 5 out of 16 in the X-Ray Crystallographic Protein Structure of the Glycoside Hydrolase Family 30 Subfamily 8 Xylanase, XYN30A, From Clostridium Acetobutylicum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of X-Ray Crystallographic Protein Structure of the Glycoside Hydrolase Family 30 Subfamily 8 Xylanase, XYN30A, From Clostridium Acetobutylicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl612 b:20.5 occ:1.00 O A:HOH995 3.1 27.4 1.0 N A:LYS282 3.3 12.6 1.0 O A:HOH1032 3.3 36.1 1.0 CG A:LYS282 3.4 12.6 0.4 CB A:ASN236 3.4 13.4 1.0 CA A:TYR281 3.7 12.8 1.0 CG A:ASN236 3.8 13.7 1.0 CD1 A:TYR281 3.9 14.2 1.0 C A:TYR281 4.0 12.9 1.0 CB A:LYS282 4.1 12.7 0.4 CB A:LYS282 4.1 13.7 0.6 CG A:LYS282 4.1 13.5 0.6 ND2 A:ASN236 4.2 13.8 1.0 OD1 A:ASN236 4.2 15.0 1.0 O A:THR280 4.2 14.9 1.0 CA A:LYS282 4.3 12.3 0.4 CA A:LYS282 4.3 12.5 0.6 CB A:TYR281 4.4 12.8 1.0 CE A:LYS282 4.6 12.2 0.4 CD A:LYS282 4.6 12.2 0.4 CG A:TYR281 4.6 13.2 1.0 O A:ASN236 4.7 13.1 1.0 O A:HOH1158 4.7 35.1 1.0 CE1 A:TYR281 4.8 16.1 1.0 N A:TYR281 4.8 12.9 1.0 CA A:ASN236 4.8 13.1 1.0 O A:HOH991 4.8 22.6 1.0 CD A:LYS282 4.9 14.6 0.6 C A:THR280 5.0 14.5 1.0

Chlorine binding site 6 out of 16 in the X-Ray Crystallographic Protein Structure of the Glycoside Hydrolase Family 30 Subfamily 8 Xylanase, XYN30A, From Clostridium Acetobutylicum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of X-Ray Crystallographic Protein Structure of the Glycoside Hydrolase Family 30 Subfamily 8 Xylanase, XYN30A, From Clostridium Acetobutylicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl613 b:19.6 occ:1.00 N A:THR16 3.2 14.7 1.0 ND2 A:ASN258 3.4 12.5 1.0 CA A:GLN15 3.7 14.2 1.0 CB A:GLN15 3.8 14.4 1.0 OG1 A:THR16 3.9 17.2 1.0 CB A:THR16 3.9 15.4 1.0 C A:GLN15 4.0 14.9 1.0 CA A:THR16 4.1 14.6 1.0 O A:HOH979 4.2 34.9 1.0 O A:HOH1123 4.4 31.2 1.0 NH2 A:ARG18 4.4 28.7 1.0 O A:THR16 4.4 13.3 1.0 O A:HOH904 4.6 30.9 1.0 CG A:ASN258 4.6 12.1 1.0 O A:HOH813 4.7 22.5 1.0 C A:THR16 4.8 14.5 1.0 O A:HOH734 4.9 37.6 1.0 OD1 A:ASP225 4.9 12.4 1.0 O A:HIS14 5.0 16.1 1.0 N A:GLN15 5.0 14.3 1.0

Chlorine binding site 7 out of 16 in the X-Ray Crystallographic Protein Structure of the Glycoside Hydrolase Family 30 Subfamily 8 Xylanase, XYN30A, From Clostridium Acetobutylicum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of X-Ray Crystallographic Protein Structure of the Glycoside Hydrolase Family 30 Subfamily 8 Xylanase, XYN30A, From Clostridium Acetobutylicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl614 b:25.6 occ:1.00 O A:HOH1043 3.2 24.7 1.0 N A:GLY28 3.3 13.1 1.0 O A:HOH740 3.4 38.4 1.0 O A:HOH1139 3.5 16.2 1.0 CA A:TRP26 3.6 10.4 1.0 C A:TRP26 3.6 11.2 1.0 CA A:GLY28 3.7 12.0 1.0 N A:CYS27 4.0 10.8 1.0 O A:TRP26 4.0 10.6 1.0 O A:HOH843 4.1 24.1 1.0 O A:HOH860 4.3 13.5 1.0 C9 A:P6G628 4.3 23.2 0.5 N A:TRP26 4.4 10.1 1.0 C A:CYS27 4.4 12.7 1.0 O10 A:P6G628 4.5 26.3 0.5 OD2 A:ASP67 4.5 16.4 1.0 CB A:TRP26 4.6 10.4 1.0 O A:HOH914 4.7 9.4 1.0 CD1 A:TRP26 4.8 12.1 1.0 CA A:CYS27 4.8 11.9 1.0 O A:HOH746 4.8 13.0 1.0 O A:HOH1157 4.9 41.8 1.0 C A:GLY28 4.9 12.9 1.0 C11 A:P6G628 4.9 41.0 0.5

Chlorine binding site 8 out of 16 in the X-Ray Crystallographic Protein Structure of the Glycoside Hydrolase Family 30 Subfamily 8 Xylanase, XYN30A, From Clostridium Acetobutylicum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of X-Ray Crystallographic Protein Structure of the Glycoside Hydrolase Family 30 Subfamily 8 Xylanase, XYN30A, From Clostridium Acetobutylicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl615 b:31.5 occ:1.00 O A:HOH1099 3.1 17.9 1.0 N A:GLU234 3.1 13.6 1.0 CA A:LEU233 3.8 12.1 1.0 NZ A:LYS243 3.9 24.9 1.0 CB A:GLU234 3.9 16.8 1.0 O A:HOH822 4.0 24.6 1.0 C A:LEU233 4.0 12.4 1.0 CD2 A:LEU233 4.0 14.6 1.0 CG A:GLU234 4.0 21.4 1.0 CB A:LEU233 4.0 13.2 1.0 O A:HOH1093 4.0 36.9 1.0 CA A:GLU234 4.1 14.6 1.0 O A:GLU234 4.1 15.5 1.0 O A:HOH899 4.1 19.0 1.0 C A:GLU234 4.6 15.2 1.0 CD A:GLU234 4.6 26.3 1.0 CG A:LEU233 4.6 13.0 1.0 OE1 A:GLU234 4.6 27.4 1.0 O A:HOH708 4.7 32.5 1.0 O A:HOH1145 4.9 34.2 1.0

Chlorine binding site 9 out of 16 in the X-Ray Crystallographic Protein Structure of the Glycoside Hydrolase Family 30 Subfamily 8 Xylanase, XYN30A, From Clostridium Acetobutylicum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of X-Ray Crystallographic Protein Structure of the Glycoside Hydrolase Family 30 Subfamily 8 Xylanase, XYN30A, From Clostridium Acetobutylicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl616 b:28.2 occ:1.00 O A:HOH1119 2.9 12.5 0.5 O A:HOH1119 4.2 16.1 0.5 O A:HOH823 4.6 12.6 0.5 O A:HOH1014 4.8 31.0 1.0

Chlorine binding site 10 out of 16 in the X-Ray Crystallographic Protein Structure of the Glycoside Hydrolase Family 30 Subfamily 8 Xylanase, XYN30A, From Clostridium Acetobutylicum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of X-Ray Crystallographic Protein Structure of the Glycoside Hydrolase Family 30 Subfamily 8 Xylanase, XYN30A, From Clostridium Acetobutylicum within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl617 b:38.2 occ:1.00 N A:THR280 3.2 14.1 1.0 O A:HOH897 3.5 28.1 1.0 CA A:GLU279 3.6 17.9 1.0 CB A:GLU279 3.8 20.7 1.0 C A:GLU279 3.9 16.5 1.0 CG A:GLU279 4.0 25.6 1.0 O A:THR280 4.0 14.9 1.0 CA A:THR280 4.1 15.0 1.0 CB A:THR280 4.1 13.7 1.0 OG1 A:THR280 4.4 13.5 1.0 C A:THR280 4.5 14.5 1.0 O A:ASN278 4.8 20.7 1.0 OH A:TYR285 4.9 13.6 1.0 O A:HOH1032 5.0 36.1 1.0 CD A:GLU279 5.0 31.4 1.0 N A:GLU279 5.0 16.7 1.0

J.F.St John, D.Dietrich, P.Bologna, J.C.Hurlbert, E.P.Pozharski, C.Crooks. Crystal Structure of A GH30 Xylanase To Be Published.