Chlorine in PDB 5d2h: 4-Oxalocrotonate Decarboxylase From Pseudomonas Putida G7 - Complexed with Magnesium and Alpha-Ketoglutarate

Enzymatic activity of 4-Oxalocrotonate Decarboxylase From Pseudomonas Putida G7 - Complexed with Magnesium and Alpha-Ketoglutarate

All present enzymatic activity of 4-Oxalocrotonate Decarboxylase From Pseudomonas Putida G7 - Complexed with Magnesium and Alpha-Ketoglutarate:
4.1.1.77;

Protein crystallography data

The structure of 4-Oxalocrotonate Decarboxylase From Pseudomonas Putida G7 - Complexed with Magnesium and Alpha-Ketoglutarate, PDB code: 5d2h was solved by S.L.Guimaraes, R.A.P.Nagem, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	42.27 / 1.94
*Space group*	P 2₁ 2₁ 2₁
*Cell size a, b, c (Å), α, β, γ (°)*	43.741, 44.904, 125.318, 90.00, 90.00, 90.00
*R / R_free (%)*	16.3 / 23.1

Other elements in 5d2h:

The structure of 4-Oxalocrotonate Decarboxylase From Pseudomonas Putida G7 - Complexed with Magnesium and Alpha-Ketoglutarate also contains other interesting chemical elements:

Magnesium

(Mg)

1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 4-Oxalocrotonate Decarboxylase From Pseudomonas Putida G7 - Complexed with Magnesium and Alpha-Ketoglutarate (pdb code 5d2h). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the 4-Oxalocrotonate Decarboxylase From Pseudomonas Putida G7 - Complexed with Magnesium and Alpha-Ketoglutarate, PDB code: 5d2h:

Chlorine binding site 1 out of 1 in 5d2h

Go back to

Chlorine Binding Sites List in 5d2h

Chlorine binding site 1 out of 1 in the 4-Oxalocrotonate Decarboxylase From Pseudomonas Putida G7 - Complexed with Magnesium and Alpha-Ketoglutarate

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 4-Oxalocrotonate Decarboxylase From Pseudomonas Putida G7 - Complexed with Magnesium and Alpha-Ketoglutarate within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
A:Cl312 b:26.2 occ:1.00	O	A:HOH458	3.0	26.8	1.0
	NE	A:ARG167	3.1	19.7	1.0
	N	A:ASP99	3.2	16.1	1.0
	NH2	A:ARG167	3.4	16.9	1.0
	CZ	A:ARG167	3.7	17.7	1.0
	CB	A:ASP99	3.8	15.7	1.0
	CA	A:ASP99	4.0	16.2	1.0
	O	A:HOH551	4.0	31.1	1.0
	O	A:ASP99	4.1	14.7	1.0
	CA	A:VAL98	4.1	16.9	1.0
	C	A:VAL98	4.2	15.8	1.0
	CD	A:LYS102	4.2	28.0	1.0
	CG1	A:VAL98	4.2	13.4	1.0
	CD	A:ARG167	4.3	16.0	1.0
	C	A:ASP99	4.5	18.3	1.0
	O	A:VAL97	4.6	15.4	1.0
	O	A:HOH473	4.7	21.0	1.0
	CB	A:LYS102	4.8	16.2	1.0
	CB	A:VAL98	4.8	17.2	1.0
	CG	A:LYS102	4.9	15.7	1.0

Reference:

S.L.Guimaraes, J.B.Coitinho, D.M.Costa, S.S.Araujo, C.P.Whitman, R.A.Nagem. Crystal Structures of Apo and Liganded 4-Oxalocrotonate Decarboxylase Uncover A Structural Basis For the Metal-Assisted Decarboxylation of A Vinylogous Beta-Keto Acid. Biochemistry V. 55 2632 2016.
ISSN: ISSN 0006-2960
PubMed: 27082660
DOI: 10.1021/ACS.BIOCHEM.6B00050

Page generated: Fri Jul 26 06:29:42 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0

	© Copyright 2008-2020 by atomistry.com
Home \| Site Map \| Copyright \| Contact us \| Privacy