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Chlorine in PDB 5d4f: Crystal Structure of C-As Lyase with Fe(III)

Protein crystallography data

The structure of Crystal Structure of C-As Lyase with Fe(III), PDB code: 5d4f was solved by S.Venkadesh, M.Yoshinaga, B.Sankaran, P.Kandavelu, B.P.Rosen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.02 / 1.72
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 42.370, 42.370, 116.900, 90.00, 90.00, 90.00
R / Rfree (%) 21.1 / 23.5

Other elements in 5d4f:

The structure of Crystal Structure of C-As Lyase with Fe(III) also contains other interesting chemical elements:

Iron (Fe) 1 atom
Sodium (Na) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of C-As Lyase with Fe(III) (pdb code 5d4f). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of C-As Lyase with Fe(III), PDB code: 5d4f:

Chlorine binding site 1 out of 1 in 5d4f

Go back to Chlorine Binding Sites List in 5d4f
Chlorine binding site 1 out of 1 in the Crystal Structure of C-As Lyase with Fe(III)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of C-As Lyase with Fe(III) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:50.4
occ:1.00
N A:VAL34 3.5 20.4 1.0
NH1 A:ARG35 3.6 24.7 1.0
CA A:LYS33 3.8 22.5 1.0
O A:VAL34 4.1 26.1 1.0
C A:LYS33 4.1 26.4 1.0
O A:ALA32 4.2 25.3 1.0
CA A:VAL34 4.5 20.5 1.0
N A:LYS33 4.6 21.1 1.0
CB A:VAL34 4.7 22.9 1.0
CZ A:ARG35 4.7 27.2 1.0
C A:VAL34 4.8 32.2 1.0
C A:ALA32 4.8 22.7 1.0
CB A:LYS33 4.8 19.4 1.0
CG A:LYS33 4.9 37.7 1.0
O A:HOH305 5.0 28.7 1.0

Reference:

S.Venkadesh, M.Yoshinaga, B.Sankaran, P.Kandavelu, B.P.Rosen. Crystal Structure of C-As Lyase with Mercaptoethonal To Be Published.
Page generated: Fri Jul 26 06:30:39 2024

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