Chlorine in PDB 5d66: Crystal Structure of An Ankyrin Repeat Domain (ABAYE2397) From Acinetobacter Baumannii Aye at 1.00 A Resolution
Protein crystallography data
The structure of Crystal Structure of An Ankyrin Repeat Domain (ABAYE2397) From Acinetobacter Baumannii Aye at 1.00 A Resolution, PDB code: 5d66
was solved by
Joint Center For Structural Genomics (Jcsg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
27.23 /
1.00
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
43.268,
43.221,
49.632,
83.85,
89.96,
78.38
|
R / Rfree (%)
|
13.9 /
16.8
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of An Ankyrin Repeat Domain (ABAYE2397) From Acinetobacter Baumannii Aye at 1.00 A Resolution
(pdb code 5d66). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the
Crystal Structure of An Ankyrin Repeat Domain (ABAYE2397) From Acinetobacter Baumannii Aye at 1.00 A Resolution, PDB code: 5d66:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
Chlorine binding site 1 out
of 6 in 5d66
Go back to
Chlorine Binding Sites List in 5d66
Chlorine binding site 1 out
of 6 in the Crystal Structure of An Ankyrin Repeat Domain (ABAYE2397) From Acinetobacter Baumannii Aye at 1.00 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of An Ankyrin Repeat Domain (ABAYE2397) From Acinetobacter Baumannii Aye at 1.00 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl301
b:10.0
occ:1.00
|
O
|
A:HOH542
|
3.2
|
22.8
|
1.0
|
O
|
A:HOH639
|
3.2
|
16.4
|
1.0
|
ND2
|
A:ASN170
|
3.4
|
7.2
|
1.0
|
ND2
|
A:ASN137
|
3.5
|
8.0
|
1.0
|
CA
|
A:GLY141
|
3.5
|
7.8
|
1.0
|
CD
|
A:PRO146
|
3.7
|
5.7
|
1.0
|
CG2
|
A:ILE145
|
3.8
|
5.8
|
1.0
|
CB
|
A:TYR139
|
3.8
|
10.4
|
1.0
|
OD1
|
A:ASN137
|
3.8
|
7.4
|
1.0
|
CB
|
A:ILE145
|
3.9
|
4.8
|
1.0
|
N
|
A:GLY141
|
4.0
|
8.0
|
1.0
|
CG
|
A:ASN137
|
4.1
|
6.7
|
1.0
|
CB
|
A:ASN170
|
4.3
|
6.3
|
1.0
|
CG
|
A:ASN170
|
4.3
|
6.3
|
1.0
|
N
|
A:PRO146
|
4.4
|
4.9
|
1.0
|
C
|
A:GLY141
|
4.4
|
6.1
|
1.0
|
OE2
|
A:GLU179
|
4.4
|
10.3
|
1.0
|
CG
|
A:TYR139
|
4.6
|
12.8
|
1.0
|
CG
|
A:PRO146
|
4.6
|
6.9
|
1.0
|
O
|
A:THR142
|
4.6
|
6.2
|
1.0
|
CD2
|
A:TYR139
|
4.7
|
15.9
|
1.0
|
CD1
|
A:ILE145
|
4.8
|
5.7
|
1.0
|
O
|
A:TYR139
|
4.8
|
10.7
|
1.0
|
C
|
A:ILE145
|
4.8
|
5.1
|
1.0
|
CB
|
A:PRO146
|
4.9
|
6.1
|
1.0
|
C
|
A:TYR139
|
4.9
|
9.1
|
1.0
|
CA
|
A:ILE145
|
4.9
|
4.6
|
1.0
|
O
|
A:GLY141
|
4.9
|
7.3
|
1.0
|
CA
|
A:TYR139
|
4.9
|
9.5
|
1.0
|
CG1
|
A:ILE145
|
4.9
|
5.3
|
1.0
|
|
Chlorine binding site 2 out
of 6 in 5d66
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Chlorine Binding Sites List in 5d66
Chlorine binding site 2 out
of 6 in the Crystal Structure of An Ankyrin Repeat Domain (ABAYE2397) From Acinetobacter Baumannii Aye at 1.00 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of An Ankyrin Repeat Domain (ABAYE2397) From Acinetobacter Baumannii Aye at 1.00 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl302
b:17.1
occ:1.00
|
O
|
A:HOH731
|
3.0
|
28.3
|
1.0
|
O
|
A:HOH707
|
3.1
|
29.3
|
1.0
|
O
|
A:HOH480
|
3.1
|
8.3
|
1.0
|
O
|
A:HOH625
|
3.3
|
26.1
|
1.0
|
N
|
A:LEU120
|
3.4
|
6.7
|
0.6
|
N
|
A:LEU120
|
3.4
|
6.9
|
0.4
|
N
|
A:LYS121
|
3.6
|
7.3
|
1.0
|
C
|
A:TYR119
|
4.0
|
6.0
|
1.0
|
ND2
|
A:ASN85
|
4.0
|
10.9
|
1.0
|
CG
|
A:LYS121
|
4.0
|
12.3
|
1.0
|
CA
|
A:TYR119
|
4.1
|
6.1
|
1.0
|
CB
|
A:LYS121
|
4.2
|
9.0
|
1.0
|
CB
|
A:LEU120
|
4.2
|
10.0
|
0.4
|
CA
|
A:LEU120
|
4.2
|
7.9
|
0.4
|
CD
|
A:LYS121
|
4.3
|
18.3
|
1.0
|
CA
|
A:LEU120
|
4.3
|
7.5
|
0.6
|
O
|
A:GLY118
|
4.3
|
7.4
|
1.0
|
C
|
A:LEU120
|
4.4
|
6.9
|
0.4
|
C
|
A:LEU120
|
4.4
|
6.8
|
0.6
|
CD1
|
A:ILE87
|
4.5
|
13.3
|
1.0
|
CB
|
A:LEU120
|
4.5
|
9.5
|
0.6
|
CA
|
A:LYS121
|
4.5
|
7.2
|
1.0
|
OD1
|
A:ASN85
|
4.6
|
8.7
|
1.0
|
CG
|
A:ASN85
|
4.8
|
7.9
|
1.0
|
O
|
A:TYR119
|
4.9
|
6.1
|
1.0
|
CB
|
A:TYR119
|
4.9
|
6.2
|
1.0
|
|
Chlorine binding site 3 out
of 6 in 5d66
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Chlorine Binding Sites List in 5d66
Chlorine binding site 3 out
of 6 in the Crystal Structure of An Ankyrin Repeat Domain (ABAYE2397) From Acinetobacter Baumannii Aye at 1.00 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of An Ankyrin Repeat Domain (ABAYE2397) From Acinetobacter Baumannii Aye at 1.00 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl303
b:16.7
occ:1.00
|
O
|
A:HOH565
|
2.6
|
11.7
|
1.0
|
O
|
A:HOH491
|
2.8
|
18.9
|
1.0
|
OG1
|
A:THR155
|
2.9
|
7.3
|
1.0
|
N
|
A:THR155
|
3.2
|
5.4
|
1.0
|
CB
|
A:HIS152
|
3.5
|
6.4
|
1.0
|
N
|
A:GLU154
|
3.6
|
6.0
|
0.7
|
C
|
A:HIS152
|
3.6
|
5.3
|
1.0
|
N
|
A:GLU154
|
3.6
|
5.8
|
0.3
|
CB
|
A:THR155
|
3.7
|
5.9
|
1.0
|
CA
|
A:HIS152
|
3.7
|
5.7
|
1.0
|
CD1
|
A:LEU120
|
3.8
|
12.5
|
0.4
|
O
|
A:HIS152
|
3.9
|
5.4
|
1.0
|
CB
|
A:GLU154
|
3.9
|
7.1
|
0.7
|
CB
|
A:GLU154
|
4.0
|
6.3
|
0.3
|
C
|
A:GLU154
|
4.0
|
5.6
|
0.7
|
N
|
A:VAL153
|
4.0
|
5.5
|
1.0
|
C
|
A:GLU154
|
4.0
|
5.7
|
0.3
|
CA
|
A:THR155
|
4.0
|
5.4
|
1.0
|
CA
|
A:GLU154
|
4.0
|
6.2
|
0.7
|
CA
|
A:GLU154
|
4.1
|
6.0
|
0.3
|
CG
|
A:LEU120
|
4.1
|
11.2
|
0.4
|
CG
|
A:HIS152
|
4.3
|
8.2
|
1.0
|
CD2
|
A:LEU120
|
4.3
|
10.5
|
0.4
|
O
|
A:HOH761
|
4.4
|
22.8
|
1.0
|
C
|
A:VAL153
|
4.5
|
5.5
|
1.0
|
ND1
|
A:HIS152
|
4.5
|
11.4
|
1.0
|
O
|
A:HOH595
|
4.5
|
10.3
|
1.0
|
CA
|
A:GLY118
|
4.6
|
6.5
|
1.0
|
CD2
|
A:LEU120
|
4.7
|
11.5
|
0.6
|
O
|
A:GLY118
|
4.7
|
7.4
|
1.0
|
CG
|
A:GLU154
|
4.8
|
7.8
|
0.7
|
CA
|
A:VAL153
|
4.9
|
5.7
|
1.0
|
CG
|
A:GLU154
|
4.9
|
6.8
|
0.3
|
|
Chlorine binding site 4 out
of 6 in 5d66
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Chlorine Binding Sites List in 5d66
Chlorine binding site 4 out
of 6 in the Crystal Structure of An Ankyrin Repeat Domain (ABAYE2397) From Acinetobacter Baumannii Aye at 1.00 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of An Ankyrin Repeat Domain (ABAYE2397) From Acinetobacter Baumannii Aye at 1.00 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl301
b:9.7
occ:1.00
|
O
|
B:HOH514
|
3.1
|
23.6
|
1.0
|
O
|
B:HOH628
|
3.2
|
17.2
|
1.0
|
ND2
|
B:ASN170
|
3.3
|
6.7
|
1.0
|
ND2
|
B:ASN137
|
3.5
|
7.7
|
1.0
|
CA
|
B:GLY141
|
3.5
|
6.8
|
1.0
|
CG2
|
B:ILE145
|
3.7
|
5.5
|
1.0
|
CB
|
B:TYR139
|
3.8
|
9.9
|
1.0
|
CD
|
B:PRO146
|
3.8
|
5.7
|
1.0
|
OD1
|
B:ASN137
|
3.8
|
7.0
|
1.0
|
CB
|
B:ILE145
|
3.9
|
4.7
|
1.0
|
N
|
B:GLY141
|
4.0
|
7.6
|
1.0
|
CG
|
B:ASN137
|
4.1
|
6.7
|
1.0
|
CB
|
B:ASN170
|
4.2
|
5.7
|
1.0
|
CG
|
B:ASN170
|
4.3
|
5.7
|
1.0
|
N
|
B:PRO146
|
4.4
|
4.8
|
1.0
|
C
|
B:GLY141
|
4.5
|
5.6
|
1.0
|
OE2
|
B:GLU179
|
4.5
|
9.9
|
1.0
|
CG
|
B:TYR139
|
4.6
|
10.6
|
1.0
|
CG
|
B:PRO146
|
4.6
|
6.4
|
1.0
|
O
|
B:THR142
|
4.6
|
6.0
|
1.0
|
CD1
|
B:ILE145
|
4.8
|
5.9
|
1.0
|
C
|
B:ILE145
|
4.8
|
4.6
|
1.0
|
CD2
|
B:TYR139
|
4.8
|
12.6
|
1.0
|
O
|
B:TYR139
|
4.8
|
10.1
|
1.0
|
C
|
B:TYR139
|
4.9
|
7.6
|
1.0
|
CB
|
B:PRO146
|
4.9
|
5.5
|
1.0
|
CA
|
B:ILE145
|
4.9
|
4.5
|
1.0
|
CA
|
B:TYR139
|
4.9
|
8.2
|
1.0
|
O
|
B:GLY141
|
4.9
|
7.2
|
1.0
|
CG1
|
B:ILE145
|
5.0
|
5.3
|
1.0
|
|
Chlorine binding site 5 out
of 6 in 5d66
Go back to
Chlorine Binding Sites List in 5d66
Chlorine binding site 5 out
of 6 in the Crystal Structure of An Ankyrin Repeat Domain (ABAYE2397) From Acinetobacter Baumannii Aye at 1.00 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of An Ankyrin Repeat Domain (ABAYE2397) From Acinetobacter Baumannii Aye at 1.00 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl302
b:15.2
occ:1.00
|
O
|
B:HOH624
|
2.9
|
26.9
|
1.0
|
OG1
|
B:THR155
|
3.0
|
7.2
|
1.0
|
N
|
B:THR155
|
3.3
|
5.5
|
1.0
|
CB
|
B:HIS152
|
3.4
|
6.4
|
1.0
|
C
|
B:HIS152
|
3.5
|
5.9
|
1.0
|
N
|
B:GLU154
|
3.6
|
5.6
|
0.8
|
N
|
B:GLU154
|
3.6
|
5.8
|
0.2
|
CA
|
B:HIS152
|
3.6
|
6.1
|
1.0
|
CD1
|
B:LEU120
|
3.7
|
8.8
|
0.7
|
CB
|
B:THR155
|
3.8
|
5.8
|
1.0
|
N
|
B:VAL153
|
3.8
|
5.4
|
1.0
|
O
|
B:HIS152
|
3.9
|
6.2
|
1.0
|
CB
|
B:GLU154
|
3.9
|
7.3
|
0.2
|
CB
|
B:GLU154
|
4.0
|
6.5
|
0.8
|
CA
|
B:GLU154
|
4.0
|
6.2
|
0.2
|
CA
|
B:GLU154
|
4.0
|
5.9
|
0.8
|
C
|
B:GLU154
|
4.1
|
5.6
|
0.2
|
C
|
B:GLU154
|
4.1
|
5.3
|
0.8
|
CA
|
B:THR155
|
4.1
|
5.3
|
1.0
|
CG
|
B:HIS152
|
4.3
|
7.3
|
1.0
|
O
|
B:HOH603
|
4.4
|
17.7
|
1.0
|
C
|
B:VAL153
|
4.4
|
5.3
|
1.0
|
ND1
|
B:HIS152
|
4.5
|
10.4
|
1.0
|
CG
|
B:LEU120
|
4.6
|
8.6
|
0.7
|
CA
|
B:VAL153
|
4.7
|
5.6
|
1.0
|
CA
|
B:GLY118
|
4.8
|
6.7
|
1.0
|
CG
|
B:GLU154
|
4.9
|
8.2
|
0.2
|
O
|
B:GLY118
|
4.9
|
9.6
|
1.0
|
CD2
|
B:LEU120
|
4.9
|
10.0
|
0.3
|
CG
|
B:GLU154
|
5.0
|
8.0
|
0.8
|
|
Chlorine binding site 6 out
of 6 in 5d66
Go back to
Chlorine Binding Sites List in 5d66
Chlorine binding site 6 out
of 6 in the Crystal Structure of An Ankyrin Repeat Domain (ABAYE2397) From Acinetobacter Baumannii Aye at 1.00 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of An Ankyrin Repeat Domain (ABAYE2397) From Acinetobacter Baumannii Aye at 1.00 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl303
b:15.7
occ:1.00
|
O
|
B:HOH611
|
2.9
|
38.4
|
1.0
|
O
|
B:HOH438
|
3.0
|
10.0
|
1.0
|
OE1
|
B:GLN117
|
3.1
|
9.3
|
0.5
|
O
|
B:HOH466
|
3.1
|
10.1
|
1.0
|
NE2
|
B:GLN117
|
3.2
|
10.7
|
0.5
|
O
|
B:HOH523
|
3.2
|
32.9
|
1.0
|
NH2
|
B:ARG150
|
3.3
|
18.9
|
1.0
|
NE2
|
B:GLN117
|
3.6
|
10.7
|
0.5
|
NH1
|
B:ARG150
|
3.7
|
17.5
|
1.0
|
CD
|
B:GLN117
|
3.7
|
9.5
|
0.5
|
CB
|
B:ALA116
|
3.7
|
6.7
|
1.0
|
CZ
|
B:ARG150
|
3.9
|
14.2
|
1.0
|
CE1
|
B:TYR113
|
4.2
|
9.3
|
1.0
|
CD1
|
B:TYR113
|
4.2
|
8.4
|
1.0
|
CD
|
B:GLN117
|
4.3
|
9.7
|
0.5
|
O
|
B:HOH617
|
4.3
|
13.3
|
1.0
|
CG
|
B:GLN117
|
4.6
|
8.0
|
0.5
|
O
|
B:HOH555
|
4.7
|
34.0
|
1.0
|
OD2
|
B:ASP108
|
4.8
|
7.7
|
1.0
|
OD1
|
B:ASP108
|
4.8
|
7.7
|
1.0
|
O
|
B:HOH691
|
4.8
|
24.6
|
1.0
|
NH1
|
B:ARG138
|
4.8
|
13.3
|
1.0
|
|
Reference:
Joint Center For Structural Genomics (Jcsg),
Joint Center For Structural Genomics (Jcsg).
N/A N/A.
Page generated: Fri Jul 26 06:31:47 2024
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