Chlorine in PDB 5d9g: Crystal Structure of Tiprl, Tor Signaling Pathway Regulator-Like, in Complex with Peptide

The structure of Crystal Structure of Tiprl, Tor Signaling Pathway Regulator-Like, in Complex with Peptide, PDB code: 5d9g was solved by V.Scorsato, J.Sandy, J.Brandao-Neto, H.M.Pereira, J.H.C.Smetana, R.Aparicio, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	52.62 / 2.15
Space group	P 65
Cell size a, b, c (Å), α, β, γ (°)	145.307, 145.307, 95.950, 90.00, 90.00, 120.00
R / Rfree (%)	18.2 / 19.9

The structure of Crystal Structure of Tiprl, Tor Signaling Pathway Regulator-Like, in Complex with Peptide also contains other interesting chemical elements:

Nickel

(Ni)

1 atom

The binding sites of Chlorine atom in the Crystal Structure of Tiprl, Tor Signaling Pathway Regulator-Like, in Complex with Peptide (pdb code 5d9g). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Tiprl, Tor Signaling Pathway Regulator-Like, in Complex with Peptide, PDB code: 5d9g:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Tiprl, Tor Signaling Pathway Regulator-Like, in Complex with Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Tiprl, Tor Signaling Pathway Regulator-Like, in Complex with Peptide within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl301 b:45.6 occ:1.00 N A:MSE82 3.1 39.5 1.0 N A:TYR108 3.1 47.5 1.0 N A:GLY81 3.2 45.6 1.0 N A:GLN80 3.3 43.8 1.0 N A:LEU83 3.6 37.4 1.0 CB A:TYR108 3.7 42.1 1.0 CB A:GLN80 3.8 41.0 1.0 CG A:LEU83 3.8 45.5 1.0 CA A:GLN80 3.8 42.1 1.0 CA A:PRO107 3.8 45.5 1.0 CB A:MSE82 3.8 47.3 1.0 CA A:MSE82 3.8 54.0 1.0 C A:GLN80 3.8 45.6 1.0 C A:PRO107 3.9 47.3 1.0 CA A:TYR108 4.0 44.2 1.0 C A:GLY81 4.0 46.1 1.0 CA A:GLY81 4.0 44.4 1.0 C A:MSE82 4.2 50.5 1.0 CD1 A:TYR79 4.2 49.4 1.0 CE1 A:TYR79 4.2 53.2 1.0 CB A:LEU83 4.3 48.3 1.0 CB A:PRO107 4.3 40.7 1.0 C A:TYR79 4.3 41.2 1.0 CG A:GLN80 4.4 49.4 1.0 CG A:MSE82 4.5 55.2 1.0 CA A:TYR79 4.5 42.6 1.0 CD1 A:LEU83 4.5 41.7 1.0 CA A:LEU83 4.5 44.8 1.0 O A:TYR108 4.5 48.3 1.0 CG A:TYR79 4.6 49.5 1.0 CD2 A:LEU83 4.7 39.0 1.0 CZ A:TYR79 4.7 57.1 1.0 C A:TYR108 4.8 46.4 1.0 O A:GLN80 4.9 52.9 1.0 CD2 A:TYR79 5.0 56.0 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Tiprl, Tor Signaling Pathway Regulator-Like, in Complex with Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Tiprl, Tor Signaling Pathway Regulator-Like, in Complex with Peptide within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl301 b:45.4 occ:1.00 N B:MSE82 3.0 40.8 1.0 N B:GLY81 3.1 48.8 1.0 N B:TYR108 3.2 43.5 1.0 N B:GLN80 3.3 45.2 1.0 N B:LEU83 3.5 39.6 1.0 CB B:TYR108 3.6 41.8 1.0 CB B:GLN80 3.7 49.9 1.0 CA B:GLN80 3.8 51.2 1.0 CB B:MSE82 3.8 40.1 1.0 CA B:MSE82 3.8 49.6 1.0 CG B:LEU83 3.8 45.6 1.0 C B:GLN80 3.8 53.0 1.0 C B:GLY81 3.9 46.5 1.0 CA B:PRO107 3.9 49.1 1.0 CA B:GLY81 3.9 47.7 1.0 CA B:TYR108 4.0 41.2 1.0 C B:PRO107 4.0 46.5 1.0 CD1 B:TYR79 4.1 45.4 1.0 C B:MSE82 4.1 51.9 1.0 CE1 B:TYR79 4.1 54.0 1.0 CB B:LEU83 4.3 43.8 1.0 C B:TYR79 4.3 48.0 1.0 CG B:GLN80 4.4 52.5 1.0 CG B:MSE82 4.4 42.6 1.0 CA B:LEU83 4.5 42.8 1.0 CB B:PRO107 4.5 48.5 1.0 CA B:TYR79 4.5 43.4 1.0 CG B:TYR79 4.6 45.3 1.0 CD1 B:LEU83 4.6 43.4 1.0 O B:TYR108 4.6 46.0 1.0 CZ B:TYR79 4.7 55.6 1.0 CD2 B:LEU83 4.7 39.0 1.0 C B:TYR108 4.8 45.3 1.0 O B:LYS106 4.9 48.2 1.0 O B:GLN80 4.9 59.9 1.0

V.Scorsato, T.B.Lima, G.L.Righetto, N.I.Zanchin, J.Brandao-Neto, J.Sandy, H.D.Pereira, A.J.Ferrari, F.C.Gozzo, J.H.Smetana, R.Aparicio. Crystal Structure of the Human TIP41 Orthologue, Tiprl, Reveals A Novel Fold and A Binding Site For the PP2AC C-Terminus. Sci Rep V. 6 30813 2016.
ISSN: ESSN 2045-2322
PubMed: 27489114
DOI: 10.1038/SREP30813