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Chlorine in PDB 5dgc: Reaction of Phosphorylated Chey with Imidazole 2 of 3

Protein crystallography data

The structure of Reaction of Phosphorylated Chey with Imidazole 2 of 3, PDB code: 5dgc was solved by S.Page, R.E.Silversmith, R.B.Bourret, E.J.Collins, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.43 / 1.94
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 53.490, 53.580, 161.980, 90.00, 90.00, 90.00
R / Rfree (%) 16.9 / 18.9

Other elements in 5dgc:

The structure of Reaction of Phosphorylated Chey with Imidazole 2 of 3 also contains other interesting chemical elements:

Fluorine (F) 6 atoms
Manganese (Mn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Reaction of Phosphorylated Chey with Imidazole 2 of 3 (pdb code 5dgc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Reaction of Phosphorylated Chey with Imidazole 2 of 3, PDB code: 5dgc:

Chlorine binding site 1 out of 1 in 5dgc

Go back to Chlorine Binding Sites List in 5dgc
Chlorine binding site 1 out of 1 in the Reaction of Phosphorylated Chey with Imidazole 2 of 3


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Reaction of Phosphorylated Chey with Imidazole 2 of 3 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:35.4
occ:1.00
O A:HOH423 3.0 31.8 1.0
NZ B:LYS92 3.1 35.6 1.0
O A:HOH375 3.1 24.9 1.0
NZ A:LYS119 3.2 34.1 1.0
O B:HOH375 3.5 49.4 1.0
CB B:GLU93 3.7 37.3 1.0
CA B:GLU93 3.9 30.6 1.0
CE A:LYS119 3.9 31.0 1.0
CG B:LYS92 4.0 33.0 1.0
CD A:LYS119 4.0 31.1 1.0
N B:GLU93 4.1 28.9 1.0
O B:HOH350 4.1 53.5 1.0
CD1 B:ILE96 4.2 30.5 1.0
CE B:LYS92 4.3 35.7 1.0
O B:HOH377 4.5 29.8 1.0
CD B:LYS92 4.5 34.6 1.0
CE A:LYS122 4.6 32.1 1.0
CD A:LYS122 4.6 30.8 1.0
C B:LYS92 4.6 28.5 1.0
O B:HOH364 4.6 25.4 1.0
O A:TYR106 4.9 20.1 1.0
O B:LYS92 4.9 26.3 1.0
O A:HOH372 4.9 23.0 1.0

Reference:

S.C.Page, R.E.Silversmith, E.J.Collins, R.B.Bourret. Imidazole As A Small Molecule Analogue in Two-Component Signal Transduction. Biochemistry V. 54 7248 2015.
ISSN: ISSN 0006-2960
PubMed: 26569142
DOI: 10.1021/ACS.BIOCHEM.5B01082
Page generated: Sat Dec 12 11:38:36 2020

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