Chlorine in PDB 5dhf: Crystal Structure of HRIO2 Nes Peptide in Complex with CRM1-Ran-RANBP1

The structure of Crystal Structure of HRIO2 Nes Peptide in Complex with CRM1-Ran-RANBP1, PDB code: 5dhf was solved by H.Y.Fung, Y.M.Chook, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.72 / 2.29
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	106.479, 106.479, 303.731, 90.00, 90.00, 90.00
R / Rfree (%)	17.8 / 21.9

The structure of Crystal Structure of HRIO2 Nes Peptide in Complex with CRM1-Ran-RANBP1 also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Zinc	(Zn)	1 atom

The binding sites of Chlorine atom in the Crystal Structure of HRIO2 Nes Peptide in Complex with CRM1-Ran-RANBP1 (pdb code 5dhf). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of HRIO2 Nes Peptide in Complex with CRM1-Ran-RANBP1, PDB code: 5dhf:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of HRIO2 Nes Peptide in Complex with CRM1-Ran-RANBP1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of HRIO2 Nes Peptide in Complex with CRM1-Ran-RANBP1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl1101 b:55.6 occ:1.00 N C:GLU355 3.4 23.5 1.0 O C:HOH1317 3.5 42.9 1.0 C C:GLU355 3.5 26.2 1.0 N C:ARG356 3.6 25.5 0.6 N C:ARG356 3.6 25.5 0.5 O C:GLU355 3.7 25.4 1.0 ND2 C:ASN434 3.7 45.6 1.0 CA C:ARG356 3.8 27.2 0.6 CA C:ARG356 3.8 27.1 0.5 CB C:PHE359 4.0 19.3 1.0 O C:ILE353 4.1 23.6 1.0 CA C:GLU355 4.1 20.0 1.0 CA C:GLU354 4.1 29.8 1.0 C C:GLU354 4.1 25.4 1.0 OD1 C:ASN434 4.4 47.2 1.0 CG C:PHE359 4.4 18.3 1.0 CG C:ASN434 4.5 43.6 1.0 CG C:ARG356 4.6 34.1 0.6 CD C:ARG356 4.6 37.2 0.5 O C:HOH1355 4.7 27.4 1.0 CD C:ARG356 4.7 37.3 0.6 CB C:ARG356 4.7 31.1 0.5 CB C:ARG356 4.7 31.2 0.6 NH2 C:ARG356 4.8 31.8 0.5 CD1 C:PHE359 4.8 19.6 1.0 C C:ARG356 4.8 25.7 0.6 C C:ARG356 4.8 25.6 0.5 O C:HOH1300 4.9 36.0 1.0 O C:ARG356 4.9 23.6 0.6 O C:ARG356 4.9 23.8 0.5 C C:ILE353 5.0 23.9 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of HRIO2 Nes Peptide in Complex with CRM1-Ran-RANBP1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of HRIO2 Nes Peptide in Complex with CRM1-Ran-RANBP1 within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl1102 b:67.5 occ:1.00 O C:HOH1247 3.1 24.7 1.0 NZ C:LYS254 3.3 45.7 1.0 OD1 C:ASP314 3.5 36.3 1.0 O A:HOH414 3.7 26.2 1.0 CG C:LYS254 3.7 33.3 1.0 O C:HOH1282 3.8 27.0 1.0 O A:LYS141 3.9 22.9 1.0 CA A:LYS141 3.9 21.0 1.0 CG A:LYS141 3.9 26.6 1.0 CB A:LYS141 4.0 21.1 1.0 CG C:MET317 4.1 21.5 1.0 CG C:ASP314 4.2 34.8 1.0 CB C:MET317 4.3 16.8 1.0 C A:LYS141 4.4 20.9 1.0 CE C:LYS254 4.4 44.8 1.0 CD C:LYS254 4.4 40.0 1.0 CB C:LYS254 4.5 29.4 1.0 CD A:LYS141 4.6 29.7 1.0 CA C:ASP314 4.6 21.9 1.0 CB C:ASP314 4.6 28.4 1.0 CA C:LYS254 4.7 26.5 1.0 OD2 C:ASP314 4.9 36.9 1.0 OG1 C:THR257 4.9 23.9 1.0

H.Y.Fung, S.C.Fu, C.A.Brautigam, Y.M.Chook. Structural Determinants of Nuclear Export Signal Orientation in Binding to Exportin CRM1. Elife V. 4 2015.
ISSN: ESSN 2050-084X
PubMed: 26349033
DOI: 10.7554/ELIFE.10034