Chlorine in PDB 5di0: Crystal Structure of DLN1

The structure of Crystal Structure of DLN1, PDB code: 5di0 was solved by N.Jia, Y.L.Jiang, W.Cheng, H.W.Wang, C.Z.Zhou, Y.Chen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.60 / 1.70
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	57.111, 95.100, 147.406, 90.00, 90.00, 90.00
R / Rfree (%)	17.2 / 20.9

The binding sites of Chlorine atom in the Crystal Structure of DLN1 (pdb code 5di0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of DLN1, PDB code: 5di0:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of DLN1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of DLN1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl418 b:25.0 occ:1.00 O2 A:EDO403 2.6 39.9 1.0 O A:HOH739 3.0 26.6 1.0 N A:GLY85 3.1 24.2 1.0 N A:GLY83 3.2 20.0 1.0 CA A:GLY85 3.5 22.8 1.0 CA A:GLY83 3.6 23.2 1.0 CA A:GLY81 3.6 15.8 1.0 C2 A:EDO403 3.6 36.2 1.0 C A:GLY83 3.7 23.9 1.0 N A:ALA84 3.7 23.4 1.0 N A:ASN82 3.7 16.9 1.0 C A:GLY81 3.9 15.8 1.0 O A:HOH837 4.0 48.2 1.0 OD1 A:ASN82 4.1 18.5 1.0 O A:HOH529 4.1 17.8 1.0 O A:GLY83 4.2 27.2 1.0 C A:ALA84 4.2 25.4 1.0 C A:ASN82 4.3 19.8 1.0 N A:GLY81 4.4 15.3 1.0 C A:GLY85 4.6 22.6 1.0 CA A:ALA84 4.6 24.0 1.0 CA A:ASN82 4.7 17.4 1.0 C1 A:EDO403 4.7 32.5 1.0 O A:GLY81 4.8 15.3 1.0 N A:THR86 4.9 19.2 1.0 O A:HOH551 4.9 28.2 1.0 O A:ARG87 4.9 15.2 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of DLN1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of DLN1 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl417 b:29.2 occ:1.00 O2 B:EDO402 2.9 32.1 1.0 N B:GLY83 3.0 17.8 1.0 O B:HOH845 3.1 26.3 1.0 N B:GLY85 3.2 22.8 1.0 CA B:GLY85 3.4 21.0 1.0 CA B:GLY83 3.5 19.4 1.0 CA B:GLY81 3.5 14.2 1.0 C B:GLY83 3.6 20.7 1.0 N B:ASN82 3.6 15.1 1.0 C2 B:EDO402 3.7 33.3 1.0 C B:GLY81 3.8 15.1 1.0 O B:GLY83 3.9 21.6 1.0 O B:HOH565 3.9 16.5 1.0 N B:ALA84 4.0 21.3 1.0 C B:ASN82 4.1 18.0 1.0 OD1 B:ASN82 4.2 16.2 1.0 N B:GLY81 4.3 14.4 1.0 C B:ALA84 4.4 23.4 1.0 O B:HOH807 4.4 35.4 1.0 CA B:ASN82 4.5 16.0 1.0 O B:GLY81 4.6 15.6 1.0 C B:GLY85 4.7 21.1 1.0 CA B:ALA84 4.8 22.4 1.0 O B:HOH636 4.9 20.4 1.0 C1 B:EDO402 4.9 30.4 1.0

N.Jia, N.Liu, W.Cheng, Y.L.Jiang, H.Sun, L.L.Chen, J.Peng, Y.Zhang, Y.H.Ding, Z.H.Zhang, X.Wang, G.Cai, J.Wang, M.Q.Dong, Z.Zhang, H.Wu, H.W.Wang, Y.Chen, C.Z.Zhou. Structural Basis For Receptor Recognition and Pore Formation of A Zebrafish Aerolysin-Like Protein. Embo Rep. V. 17 235 2016.
ISSN: ESSN 1469-3178
PubMed: 26711430
DOI: 10.15252/EMBR.201540851