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Chlorine in PDB 5dla: Structure of Tetragonal Lysozyme Solved By Uwo Students

Enzymatic activity of Structure of Tetragonal Lysozyme Solved By Uwo Students

All present enzymatic activity of Structure of Tetragonal Lysozyme Solved By Uwo Students:
3.2.1.17;

Protein crystallography data

The structure of Structure of Tetragonal Lysozyme Solved By Uwo Students, PDB code: 5dla was solved by R.Bednarski, N.Cirricione, A.Greco, R.Hodgson, S.Kent, J.Mcgowan, B.Notherm, M.Patt, L.Vue, C.Mbianchetti, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.41 / 1.22
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.938, 78.938, 36.882, 90.00, 90.00, 90.00
R / Rfree (%) 13.7 / 16.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Tetragonal Lysozyme Solved By Uwo Students (pdb code 5dla). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the Structure of Tetragonal Lysozyme Solved By Uwo Students, PDB code: 5dla:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7;

Chlorine binding site 1 out of 7 in 5dla

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Chlorine binding site 1 out of 7 in the Structure of Tetragonal Lysozyme Solved By Uwo Students


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Tetragonal Lysozyme Solved By Uwo Students within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:9.6
occ:1.00
 OH A:TYR23 3.0 7.9 1.0
O A:HOH365 3.3 10.0 1.0
O A:HOH427 3.3 49.0 1.0
CE2 A:TYR23 3.7 6.9 1.0
CZ A:TYR23 3.7 6.7 1.0
CA A:GLY104 4.1 7.6 1.0
O A:HOH317 4.2 22.0 0.3
O A:ARG21 4.6 10.1 1.0
N A:GLY104 4.6 8.0 1.0
CE1 A:TYR23 4.9 6.8 1.0
CD2 A:TYR23 4.9 7.1 1.0

Chlorine binding site 2 out of 7 in 5dla

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Chlorine binding site 2 out of 7 in the Structure of Tetragonal Lysozyme Solved By Uwo Students


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Tetragonal Lysozyme Solved By Uwo Students within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:13.8
occ:1.00
 O A:HOH452 3.0 38.0 1.0
OG A:SER24 3.0 12.1 1.0
N A:GLY26 3.1 7.2 1.0
O A:HOH480 3.3 42.5 1.0
CA A:GLY26 3.5 8.1 1.0
CB A:SER24 3.5 11.1 1.0
CA A:GLN121 3.6 13.2 1.0
CD1 A:ILE124 3.8 17.4 1.0
CB A:GLN121 4.0 17.7 1.0
N A:GLN121 4.0 11.5 1.0
CG1 A:ILE124 4.2 15.1 1.0
N A:LEU25 4.2 8.3 1.0
CG A:GLN121 4.2 23.2 1.0
CG2 A:VAL120 4.3 11.6 1.0
O A:VAL120 4.3 9.8 1.0
C A:VAL120 4.3 9.9 1.0
C A:LEU25 4.3 7.9 1.0
C A:SER24 4.3 8.4 1.0
C A:GLY26 4.5 6.0 1.0
CA A:SER24 4.6 9.3 1.0
N A:ASN27 4.7 6.7 1.0
CA A:LEU25 4.7 8.6 1.0
O A:SER24 4.8 8.8 1.0
C A:GLN121 4.8 11.2 1.0
O A:HOH444 4.8 25.1 1.0

Chlorine binding site 3 out of 7 in 5dla

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Chlorine binding site 3 out of 7 in the Structure of Tetragonal Lysozyme Solved By Uwo Students


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of Tetragonal Lysozyme Solved By Uwo Students within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:27.0
occ:1.00
 O A:HOH478 3.1 49.2 1.0
N A:ASN74 3.1 11.4 1.0
O A:HOH398 3.2 33.1 1.0
NE A:ARG73 3.2 16.3 1.0
CB A:ARG73 3.8 13.0 1.0
C A:ASN74 3.8 11.6 1.0
CD A:ARG73 3.8 15.9 1.0
O A:ASN74 3.9 12.2 1.0
CA A:ARG73 3.9 12.1 1.0
CA A:ASN74 3.9 11.2 1.0
C A:ARG73 4.0 11.5 1.0
CZ A:ARG73 4.2 15.9 1.0
CB A:ASN74 4.2 11.4 1.0
NH2 A:ARG73 4.3 17.2 1.0
CD2 A:LEU75 4.3 15.9 1.0
N A:LEU75 4.4 10.7 1.0
CG A:ARG73 4.4 14.3 1.0
CA A:LEU75 4.8 12.6 1.0
O A:HOH422 4.8 30.0 1.0
CG A:LEU75 5.0 14.4 1.0

Chlorine binding site 4 out of 7 in 5dla

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Chlorine binding site 4 out of 7 in the Structure of Tetragonal Lysozyme Solved By Uwo Students


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of Tetragonal Lysozyme Solved By Uwo Students within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl207

b:20.1
occ:1.00
 O A:HOH358 3.2 49.4 1.0
NZ A:LYS33 3.5 15.0 1.0
CE2 A:PHE38 3.7 9.5 1.0
CZ3 A:TRP123 3.9 14.0 1.0
CE A:LYS33 4.0 13.4 1.0
CD A:ARG5 4.2 14.5 1.0
CD A:LYS33 4.2 11.8 1.0
O A:HOH419 4.2 37.3 1.0
CB A:ARG5 4.3 12.9 1.0
O A:HOH431 4.3 28.8 1.0
CZ A:PHE38 4.3 8.8 1.0
C2 A:EDO201 4.6 36.7 1.0
CD2 A:PHE38 4.7 8.1 1.0
CG A:ARG5 4.7 13.3 1.0
CE3 A:TRP123 4.7 12.4 1.0
NE A:ARG5 4.7 15.6 1.0
O A:HOH314 4.8 47.4 1.0
CH2 A:TRP123 4.9 14.3 1.0

Chlorine binding site 5 out of 7 in 5dla

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Chlorine binding site 5 out of 7 in the Structure of Tetragonal Lysozyme Solved By Uwo Students


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Structure of Tetragonal Lysozyme Solved By Uwo Students within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl208

b:12.1
occ:1.00
 O A:HOH469 3.1 12.1 0.5
O A:HOH441 3.1 22.8 1.0
O A:HOH381 3.2 8.9 1.0
N A:THR69 3.2 8.9 1.0
O A:THR69 3.3 10.5 1.0
N A:ARG68 3.5 9.0 0.5
C A:GLY67 3.5 9.3 1.0
N A:ARG68 3.5 8.9 0.5
CA A:GLY67 3.6 10.4 1.0
O A:HOH469 3.7 14.5 0.5
N A:GLY67 3.7 8.8 1.0
OG A:SER72 3.7 13.0 1.0
C A:THR69 3.7 9.7 1.0
O A:HOH370 3.7 24.4 1.0
OD1 A:ASN65 3.7 11.0 1.0
CA A:THR69 3.9 9.1 1.0
O A:HOH401 4.0 12.7 1.0
O A:GLY67 4.2 11.0 1.0
C A:ARG68 4.2 10.2 0.5
CB A:THR69 4.2 9.2 1.0
C A:ARG68 4.2 9.5 0.5
OD1 A:ASP66 4.2 7.7 1.0
CA A:ARG68 4.3 10.2 0.5
CA A:ARG68 4.3 9.0 0.5
N A:PRO70 4.6 10.0 1.0
O A:HOH302 4.7 14.8 1.0
C A:ASP66 4.8 7.5 1.0
OG1 A:THR69 4.8 9.3 1.0
O A:HOH372 4.8 17.5 0.5
CB A:SER72 4.9 13.0 1.0
N A:ASP66 4.9 7.4 1.0
CG A:ASN65 4.9 10.4 1.0

Chlorine binding site 6 out of 7 in 5dla

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Chlorine binding site 6 out of 7 in the Structure of Tetragonal Lysozyme Solved By Uwo Students


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Structure of Tetragonal Lysozyme Solved By Uwo Students within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl209

b:23.2
occ:1.00
 O A:HOH455 3.2 54.9 1.0
N A:ILE88 3.4 9.9 1.0
O A:HOH339 3.4 21.7 1.0
O A:HOH321 3.5 26.1 1.0
CG1 A:ILE88 3.7 11.5 1.0
CA A:ASP87 3.9 12.3 1.0
CE1 A:HIS15 3.9 19.5 1.0
O A:SER86 4.0 13.8 1.0
C A:ASP87 4.1 10.2 1.0
OD1 A:ASP87 4.1 18.6 1.0
CG2 A:ILE88 4.2 12.0 1.0
CZ A:PHE3 4.2 11.0 1.0
CB A:ALA11 4.2 10.4 1.0
CB A:ILE88 4.3 10.5 1.0
CA A:ILE88 4.4 9.6 1.0
O A:HOH428 4.5 44.9 1.0
CG A:ASP87 4.5 19.7 1.0
CD1 A:ILE88 4.6 12.1 1.0
NE2 A:HIS15 4.6 20.5 1.0
CB A:ASP87 4.7 15.9 1.0
ND1 A:HIS15 4.7 18.0 1.0
CE1 A:PHE3 4.7 10.6 1.0
N A:ASP87 4.8 11.1 1.0
C A:SER86 4.9 11.6 1.0

Chlorine binding site 7 out of 7 in 5dla

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Chlorine binding site 7 out of 7 in the Structure of Tetragonal Lysozyme Solved By Uwo Students


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Structure of Tetragonal Lysozyme Solved By Uwo Students within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl210

b:23.1
occ:1.00
 O A:HOH353 3.0 9.5 1.0
O A:HOH448 3.4 42.6 1.0
O A:HOH421 3.4 21.1 1.0
CG2 A:VAL2 3.7 10.0 1.0
O A:HOH488 4.1 34.2 1.0
N A:VAL2 4.1 9.8 1.0
CA A:LYS1 4.5 10.7 1.0
CB A:VAL2 4.6 10.3 1.0
C A:LYS1 4.6 9.0 1.0
N A:LYS1 4.6 10.8 1.0
NE2 A:GLN41 4.8 8.9 1.0
CA A:VAL2 5.0 8.9 1.0

Reference:

R.Bednarski, N.Cirricione, A.Greco, R.Hodgson, S.Kent, J.Mcgowan, B.Notherm, M.Patt, L.Vue, C.Mbianchetti. Structure of Tetragonal Lysozyme in Complex with Iodine Solved By Uwo Students To Be Published.
Page generated: Fri Jul 26 06:46:31 2024

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