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Chlorine in PDB 5dll: Aminopeptidase N (Pepn) From Francisella Tularensis Subsp. Tularensis Schu S4

Enzymatic activity of Aminopeptidase N (Pepn) From Francisella Tularensis Subsp. Tularensis Schu S4

All present enzymatic activity of Aminopeptidase N (Pepn) From Francisella Tularensis Subsp. Tularensis Schu S4:
3.4.11.2;

Protein crystallography data

The structure of Aminopeptidase N (Pepn) From Francisella Tularensis Subsp. Tularensis Schu S4, PDB code: 5dll was solved by D.Borek, J.Raczynska, I.Dubrovska, S.Grimshaw, G.Minasov, L.Shuvalova, K.Kwon, W.F.Anderson, Z.Otwinowski, Center For Structural Genomics Ofinfectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 65.53 / 2.51
Space group P 31
Cell size a, b, c (Å), α, β, γ (°) 75.670, 75.670, 161.042, 90.00, 90.00, 120.00
R / Rfree (%) 19.3 / 26

Other elements in 5dll:

The structure of Aminopeptidase N (Pepn) From Francisella Tularensis Subsp. Tularensis Schu S4 also contains other interesting chemical elements:

Zinc (Zn) 1 atom
Sodium (Na) 1 atom

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 15;

Binding sites:

The binding sites of Chlorine atom in the Aminopeptidase N (Pepn) From Francisella Tularensis Subsp. Tularensis Schu S4 (pdb code 5dll). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 15 binding sites of Chlorine where determined in the Aminopeptidase N (Pepn) From Francisella Tularensis Subsp. Tularensis Schu S4, PDB code: 5dll:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 15 in 5dll

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Chlorine binding site 1 out of 15 in the Aminopeptidase N (Pepn) From Francisella Tularensis Subsp. Tularensis Schu S4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Aminopeptidase N (Pepn) From Francisella Tularensis Subsp. Tularensis Schu S4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl902

b:26.9
occ:1.00
 ND2 A:ASN700 3.4 82.9 1.0
CA A:LEU697 3.8 60.4 1.0
CB A:ASN700 3.8 63.1 1.0
N A:LEU697 3.9 61.0 1.0
C A:GLN696 4.1 65.8 1.0
O A:GLN696 4.1 68.7 1.0
CG A:ASN700 4.1 68.2 1.0
OD1 A:ASN656 4.2 73.5 1.0
ND2 A:ASN656 4.2 55.7 1.0
CD1 A:LEU697 4.3 60.5 1.0
CB A:GLN696 4.4 70.2 1.0
CB A:LEU697 4.5 67.0 1.0
CG A:ASN656 4.7 56.5 1.0
CA A:GLN696 4.9 65.8 1.0
C A:LEU697 4.9 62.2 1.0

Chlorine binding site 2 out of 15 in 5dll

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Chlorine binding site 2 out of 15 in the Aminopeptidase N (Pepn) From Francisella Tularensis Subsp. Tularensis Schu S4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Aminopeptidase N (Pepn) From Francisella Tularensis Subsp. Tularensis Schu S4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl903

b:40.8
occ:1.00
 CD1 A:TYR778 3.7 60.7 1.0
CB A:TYR778 3.8 48.7 1.0
CE A:MET820 3.9 59.6 1.0
CG A:TYR778 4.0 57.8 1.0
CA A:TYR778 4.1 48.3 1.0
CA A:GLY782 4.1 44.6 1.0
O A:TYR778 4.4 48.7 1.0
CE1 A:TYR778 4.6 61.3 1.0
C A:TYR778 4.7 47.3 1.0
C A:GLY782 4.9 42.8 1.0
SD A:MET820 4.9 53.5 1.0

Chlorine binding site 3 out of 15 in 5dll

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Chlorine binding site 3 out of 15 in the Aminopeptidase N (Pepn) From Francisella Tularensis Subsp. Tularensis Schu S4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Aminopeptidase N (Pepn) From Francisella Tularensis Subsp. Tularensis Schu S4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl904

b:39.6
occ:1.00
 N A:ASP627 3.2 50.8 1.0
N A:VAL626 3.5 46.4 1.0
CB A:ASP627 3.6 62.2 1.0
OD1 A:ASP628 3.6 69.5 1.0
C A:MET625 3.6 50.1 1.0
N A:ASP628 3.6 49.8 1.0
CA A:ASP627 3.8 53.7 1.0
CA A:MET625 3.8 54.6 1.0
CE A:MET625 3.8 55.8 1.0
CB A:MET625 4.0 55.3 1.0
OD2 A:ASP627 4.1 66.6 1.0
C A:VAL626 4.1 44.8 1.0
C A:ASP627 4.2 49.9 1.0
O A:MET625 4.2 53.9 1.0
CG A:ASP627 4.2 67.7 1.0
CA A:VAL626 4.3 48.7 1.0
CG A:ASP628 4.5 61.4 1.0
CB A:ASP628 4.7 57.3 1.0
CA A:ASP628 4.7 49.2 1.0
SD A:MET625 4.9 62.6 1.0
CB A:VAL626 4.9 59.3 1.0
CG A:MET625 5.0 58.2 1.0

Chlorine binding site 4 out of 15 in 5dll

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Chlorine binding site 4 out of 15 in the Aminopeptidase N (Pepn) From Francisella Tularensis Subsp. Tularensis Schu S4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Aminopeptidase N (Pepn) From Francisella Tularensis Subsp. Tularensis Schu S4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl905

b:37.6
occ:1.00
 OH A:TYR769 3.3 52.3 1.0
CE2 A:TYR769 4.0 60.8 1.0
CD2 A:LEU809 4.0 54.5 1.0
CB A:PRO771 4.0 63.0 1.0
CG2 A:THR805 4.0 50.3 1.0
CZ A:TYR769 4.1 56.0 1.0
CB A:THR805 4.3 51.5 1.0
CG A:LEU809 4.3 52.8 1.0
CB A:ALA808 4.4 50.0 1.0
O A:THR805 4.5 49.6 1.0
CA A:THR805 4.6 51.5 1.0
CG A:PRO771 4.8 64.9 1.0
CG1 A:VAL764 4.9 55.0 1.0
CD1 A:ILE781 4.9 44.7 1.0

Chlorine binding site 5 out of 15 in 5dll

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Chlorine binding site 5 out of 15 in the Aminopeptidase N (Pepn) From Francisella Tularensis Subsp. Tularensis Schu S4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Aminopeptidase N (Pepn) From Francisella Tularensis Subsp. Tularensis Schu S4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl906

b:38.6
occ:1.00
 OE1 A:GLN324 3.8 58.9 1.0
NH2 A:ARG320 3.8 47.6 1.0
NH1 A:ARG374 3.9 62.0 1.0
NE2 A:GLN324 4.2 45.9 1.0
CG2 A:THR426 4.3 48.5 1.0
CB A:THR426 4.3 48.3 1.0
CD A:GLN324 4.3 48.1 1.0
CD1 A:LEU15 4.4 49.8 1.0
CZ A:ARG374 4.4 61.3 1.0
CD2 A:LEU15 4.5 55.9 1.0
CD A:ARG374 4.5 56.6 1.0
CZ A:ARG320 4.5 47.5 1.0
NH1 A:ARG320 4.6 48.3 1.0
NE A:ARG374 4.7 63.6 1.0
CG A:LEU15 4.7 52.6 1.0
OG1 A:THR426 4.8 62.3 1.0

Chlorine binding site 6 out of 15 in 5dll

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Chlorine binding site 6 out of 15 in the Aminopeptidase N (Pepn) From Francisella Tularensis Subsp. Tularensis Schu S4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Aminopeptidase N (Pepn) From Francisella Tularensis Subsp. Tularensis Schu S4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl907

b:39.4
occ:1.00
 ND2 A:ASN74 3.6 57.1 1.0
CB A:ASN74 3.8 50.2 1.0
CD2 A:LEU73 4.2 46.9 1.0
CG A:ASN74 4.2 53.3 1.0
O A:LEU73 4.4 60.1 1.0

Chlorine binding site 7 out of 15 in 5dll

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Chlorine binding site 7 out of 15 in the Aminopeptidase N (Pepn) From Francisella Tularensis Subsp. Tularensis Schu S4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Aminopeptidase N (Pepn) From Francisella Tularensis Subsp. Tularensis Schu S4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl908

b:28.2
occ:1.00
 NH1 A:ARG535 3.3 65.8 1.0
ND2 A:ASN561 3.7 53.8 1.0
CB A:ASN561 3.9 52.5 1.0
CA A:ASN561 4.0 56.6 1.0
N A:ASN561 4.1 57.5 1.0
CZ A:ARG535 4.1 65.7 1.0
CD A:ARG535 4.1 63.6 1.0
CG A:ASN561 4.3 51.6 1.0
CE A:LYS495 4.4 61.1 1.0
NZ A:LYS495 4.4 61.2 1.0
NE A:ARG535 4.4 61.9 1.0
CB A:ASN560 4.5 61.0 1.0
C A:ASN560 4.5 61.6 1.0
OE2 A:GLU508 4.8 70.8 1.0
O A:ASN560 4.9 62.9 1.0

Chlorine binding site 8 out of 15 in 5dll

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Chlorine binding site 8 out of 15 in the Aminopeptidase N (Pepn) From Francisella Tularensis Subsp. Tularensis Schu S4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Aminopeptidase N (Pepn) From Francisella Tularensis Subsp. Tularensis Schu S4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl909

b:33.2
occ:1.00
 CA A:GLN509 3.9 77.5 1.0
C A:GLN509 3.9 75.4 1.0
CG2 A:VAL510 4.1 63.4 1.0
N A:GLN509 4.1 79.4 1.0
O A:GLN509 4.2 81.0 1.0
N A:VAL510 4.3 73.0 1.0
CE A:LYS495 4.4 61.1 1.0
C A:GLU508 4.5 80.4 1.0
O A:GLU508 4.5 80.2 1.0
CG A:LYS495 4.5 59.0 1.0
CD A:LYS495 5.0 58.8 1.0

Chlorine binding site 9 out of 15 in 5dll

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Chlorine binding site 9 out of 15 in the Aminopeptidase N (Pepn) From Francisella Tularensis Subsp. Tularensis Schu S4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Aminopeptidase N (Pepn) From Francisella Tularensis Subsp. Tularensis Schu S4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl910

b:58.7
occ:1.00
 N A:GLU512 3.5 70.9 1.0
O A:GLU512 4.0 68.3 1.0
CE2 A:TYR520 4.1 83.0 1.0
CB A:ILE511 4.1 71.4 1.0
CA A:ILE511 4.2 70.3 1.0
CB A:GLU512 4.3 69.0 1.0
CA A:GLU512 4.3 68.5 1.0
C A:ILE511 4.4 69.9 1.0
CG2 A:ILE511 4.5 72.0 1.0
CD2 A:TYR520 4.5 81.5 1.0
C A:GLU512 4.6 66.5 1.0
NE2 A:GLN518 4.8 0.6 1.0
CG A:GLU512 5.0 67.5 1.0

Chlorine binding site 10 out of 15 in 5dll

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Chlorine binding site 10 out of 15 in the Aminopeptidase N (Pepn) From Francisella Tularensis Subsp. Tularensis Schu S4


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Aminopeptidase N (Pepn) From Francisella Tularensis Subsp. Tularensis Schu S4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl911

b:32.9
occ:1.00
 CB A:SER173 3.6 63.0 1.0
O A:LYS170 3.6 51.9 1.0
C A:ASP172 3.6 49.9 1.0
N A:ASP172 3.6 50.6 1.0
CA A:ASP172 3.7 52.2 1.0
N A:SER173 3.8 58.0 1.0
CD A:LYS170 3.8 54.5 1.0
CG A:LYS170 4.0 49.4 1.0
C A:ILE171 4.0 49.5 1.0
O A:ASP172 4.1 47.8 1.0
O A:ILE171 4.3 53.5 1.0
C A:LYS170 4.3 42.5 1.0
CA A:SER173 4.3 57.0 1.0
CA A:ILE171 4.7 44.2 1.0
OG A:SER173 4.7 69.0 1.0
CB A:LYS170 4.7 44.1 1.0
N A:ILE171 4.8 41.4 1.0

Reference:

D.Borek, J.Raczynska, I.Dubrovska, S.Grimshaw, G.Minasov, L.Shuvalova, K.Kwon, W.F.Anderson, Z.Otwinowski, Center For Structural Genomics Of Infectious Diseases. Aminopeptidase N (Pepn) From Francisella Tularensis Subsp. Tularensis Schu S4 To Be Published.
Page generated: Sat Jul 12 01:18:43 2025

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