Chlorine in PDB 5do8: 1.8 Angstrom Crystal Structure of Listeria Monocytogenes LMO0184 Alpha-1,6-Glucosidase

The structure of 1.8 Angstrom Crystal Structure of Listeria Monocytogenes LMO0184 Alpha-1,6-Glucosidase, PDB code: 5do8 was solved by S.H.Light, A.S.Halavaty, W.F.Anderson, Center For Structural Genomics Ofinfectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	88.123, 103.937, 193.790, 90.00, 90.00, 90.00
R / Rfree (%)	15.4 / 18.8

The binding sites of Chlorine atom in the 1.8 Angstrom Crystal Structure of Listeria Monocytogenes LMO0184 Alpha-1,6-Glucosidase (pdb code 5do8). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the 1.8 Angstrom Crystal Structure of Listeria Monocytogenes LMO0184 Alpha-1,6-Glucosidase, PDB code: 5do8:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the 1.8 Angstrom Crystal Structure of Listeria Monocytogenes LMO0184 Alpha-1,6-Glucosidase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 1.8 Angstrom Crystal Structure of Listeria Monocytogenes LMO0184 Alpha-1,6-Glucosidase within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl602 b:26.9 occ:1.00 O B:HOH910 3.1 23.5 1.0 N B:LYS163 3.3 18.8 1.0 ND2 B:ASN389 3.4 23.4 1.0 CA B:SER162 3.7 17.8 1.0 CB B:SER162 3.7 17.9 1.0 CG B:LYS163 3.9 23.1 1.0 C B:SER162 4.0 17.9 1.0 CD1 B:ILE385 4.1 23.1 1.0 CB B:LYS163 4.2 21.4 1.0 CE B:LYS163 4.3 26.7 1.0 CD B:LYS163 4.3 25.0 1.0 CA B:LYS163 4.4 19.6 1.0 CG B:ASN389 4.6 22.3 1.0 OG B:SER162 4.7 17.8 1.0 O B:PHE142 4.7 19.3 1.0 CG1 B:ILE385 4.7 21.2 1.0 O B:HOH1325 4.9 27.0 1.0 OD1 B:ASN389 4.9 22.4 1.0 O B:HOH919 4.9 21.4 1.0

Chlorine binding site 2 out of 4 in the 1.8 Angstrom Crystal Structure of Listeria Monocytogenes LMO0184 Alpha-1,6-Glucosidase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of 1.8 Angstrom Crystal Structure of Listeria Monocytogenes LMO0184 Alpha-1,6-Glucosidase within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl602 b:24.3 occ:1.00 O A:HOH767 3.2 22.9 1.0 ND2 A:ASN389 3.3 19.6 1.0 N A:LYS163 3.4 19.6 1.0 CB A:SER162 3.7 18.4 1.0 CA A:SER162 3.7 18.2 1.0 CG A:LYS163 3.8 23.6 1.0 CD1 A:ILE385 3.9 21.3 1.0 C A:SER162 4.1 18.6 1.0 CB A:LYS163 4.2 22.3 1.0 CD A:LYS163 4.2 25.3 1.0 CE A:LYS163 4.3 26.4 1.0 CA A:LYS163 4.4 20.6 1.0 CG A:ASN389 4.4 18.7 1.0 CG1 A:ILE385 4.7 19.7 1.0 O A:PHE142 4.7 19.0 1.0 OG A:SER162 4.7 18.3 1.0 O A:HOH1229 4.7 41.2 1.0 OD1 A:ASN389 4.7 18.7 1.0

Chlorine binding site 3 out of 4 in the 1.8 Angstrom Crystal Structure of Listeria Monocytogenes LMO0184 Alpha-1,6-Glucosidase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of 1.8 Angstrom Crystal Structure of Listeria Monocytogenes LMO0184 Alpha-1,6-Glucosidase within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl602 b:21.1 occ:1.00 O C:HOH779 3.1 15.3 1.0 O C:HOH1131 3.2 31.9 1.0 ND2 C:ASN121 3.3 18.8 1.0 CB C:LYS117 4.0 21.2 1.0 CB C:ASN121 4.2 18.9 1.0 CG C:ASN121 4.2 18.6 1.0 CB C:SER118 4.3 23.0 1.0 CD C:LYS117 4.3 22.4 1.0 CA C:ASN121 4.6 19.3 1.0 OE1 C:GLU114 4.7 19.3 1.0 CG C:LYS117 4.8 22.0 1.0

Chlorine binding site 4 out of 4 in the 1.8 Angstrom Crystal Structure of Listeria Monocytogenes LMO0184 Alpha-1,6-Glucosidase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of 1.8 Angstrom Crystal Structure of Listeria Monocytogenes LMO0184 Alpha-1,6-Glucosidase within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl603 b:29.6 occ:1.00 O C:HOH864 3.2 23.4 1.0 N C:LYS163 3.3 21.8 1.0 ND2 C:ASN389 3.4 22.9 1.0 CB C:SER162 3.7 19.2 1.0 CG C:LYS163 3.8 24.8 1.0 CA C:SER162 3.8 18.4 1.0 CE C:LYS163 4.0 27.7 1.0 CB C:LYS163 4.0 23.2 1.0 CD1 C:ILE385 4.0 24.7 1.0 C C:SER162 4.1 17.5 1.0 CD C:LYS163 4.1 26.3 1.0 CA C:LYS163 4.3 21.8 1.0 CG C:ASN389 4.6 22.2 1.0 OG C:SER162 4.7 19.1 1.0 O C:PHE142 4.7 21.3 1.0 CG1 C:ILE385 4.8 22.7 1.0 O C:HOH1124 4.8 40.6 1.0 NZ C:LYS163 5.0 28.3 1.0 O C:HOH739 5.0 22.3 1.0

S.H.Light, L.A.Cahoon, A.S.Halavaty, N.E.Freitag, W.F.Anderson. Structure to Function of An Alpha-Glucan Metabolic Pathway That Promotes Listeria Monocytogenes Pathogenesis. Nat Microbiol V. 2 16202 2016.
ISSN: ESSN 2058-5276
PubMed: 27819654
DOI: 10.1038/NMICROBIOL.2016.202