Chlorine in PDB 5dq0: Structure of Human Neuropilin-2 B1 Domain with Novel and Unique Zinc Binding Site

The structure of Structure of Human Neuropilin-2 B1 Domain with Novel and Unique Zinc Binding Site, PDB code: 5dq0 was solved by Y.I.Tsai, R.R.Rana, I.Zachary, S.Djordjevic, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.13 / 1.80
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	99.390, 105.270, 45.750, 90.00, 90.00, 90.00
R / Rfree (%)	17.7 / 21.7

The structure of Structure of Human Neuropilin-2 B1 Domain with Novel and Unique Zinc Binding Site also contains other interesting chemical elements:

Zinc

(Zn)

3 atoms

The binding sites of Chlorine atom in the Structure of Human Neuropilin-2 B1 Domain with Novel and Unique Zinc Binding Site (pdb code 5dq0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of Human Neuropilin-2 B1 Domain with Novel and Unique Zinc Binding Site, PDB code: 5dq0:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Structure of Human Neuropilin-2 B1 Domain with Novel and Unique Zinc Binding Site


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Human Neuropilin-2 B1 Domain with Novel and Unique Zinc Binding Site within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl504 b:37.5 occ:1.00 ZN A:ZN502 2.0 28.7 1.0 OE2 A:GLU284 3.3 30.2 1.0 ND1 A:HIS312 3.5 24.4 1.0 OE1 A:GLU284 3.5 25.2 1.0 CD A:GLU284 3.8 30.5 1.0 CE1 A:HIS312 3.8 25.0 1.0 O A:HOH633 4.4 34.7 1.0 CG A:HIS312 4.8 22.9 1.0

Chlorine binding site 2 out of 2 in the Structure of Human Neuropilin-2 B1 Domain with Novel and Unique Zinc Binding Site


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Human Neuropilin-2 B1 Domain with Novel and Unique Zinc Binding Site within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl505 b:20.6 occ:1.00 ZN A:ZN501 2.1 18.6 1.0 N A:HIS399 3.2 20.2 1.0 NE2 A:HIS377 3.3 21.3 1.0 OH A:TYR375 3.5 17.2 1.0 ND1 A:HIS399 3.6 23.7 1.0 CE1 A:HIS377 3.6 23.5 1.0 CA A:LEU398 3.7 20.9 1.0 CE2 A:TYR375 3.8 15.0 1.0 C A:LEU398 3.9 20.6 1.0 CB A:HIS399 4.0 22.1 1.0 CZ A:TYR375 4.1 15.8 1.0 CA A:HIS399 4.2 22.0 1.0 CB A:LEU398 4.2 22.0 1.0 CE A:LYS382 4.2 25.7 1.0 CG A:HIS399 4.3 23.7 1.0 CG A:LEU398 4.3 23.6 1.0 CE1 A:PHE384 4.3 19.4 1.0 O A:LYS397 4.4 22.6 1.0 CZ A:PHE384 4.5 19.0 1.0 O A:HOH684 4.5 35.4 1.0 CD2 A:HIS377 4.6 21.7 1.0 CG A:LYS382 4.6 19.1 1.0 CD A:LYS382 4.6 21.0 1.0 CE1 A:HIS399 4.8 25.1 1.0 N A:LEU398 4.8 20.2 1.0 ND1 A:HIS377 4.9 22.9 1.0 NZ A:LYS382 5.0 26.6 1.0

Y.I.Tsai, P.Frankel, R.R.Rana, C.Fotinou, T.S.Yelland, I.Zachary, S.Djordjevic. To Be Published To Be Published.