Atomistry » Chlorine » PDB 5dij-5dt9 » 5dq2
Atomistry »
  Chlorine »
    PDB 5dij-5dt9 »
      5dq2 »

Chlorine in PDB 5dq2: Endothiapepsin in Complex with Fragment 48

Enzymatic activity of Endothiapepsin in Complex with Fragment 48

All present enzymatic activity of Endothiapepsin in Complex with Fragment 48:
3.4.23.22;

Protein crystallography data

The structure of Endothiapepsin in Complex with Fragment 48, PDB code: 5dq2 was solved by N.Radeva, M.Uehlein, M.Weiss, A.Heine, G.Klebe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.14 / 1.51
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 45.614, 72.433, 52.747, 90.00, 108.94, 90.00
R / Rfree (%) 12.1 / 16.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Endothiapepsin in Complex with Fragment 48 (pdb code 5dq2). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Endothiapepsin in Complex with Fragment 48, PDB code: 5dq2:

Chlorine binding site 1 out of 1 in 5dq2

Go back to Chlorine Binding Sites List in 5dq2
Chlorine binding site 1 out of 1 in the Endothiapepsin in Complex with Fragment 48


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Endothiapepsin in Complex with Fragment 48 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:37.5
occ:0.81
CL A:5HO403 0.0 37.5 0.8
C4 A:5HO403 1.7 36.3 0.8
C3 A:5HO403 2.7 36.1 0.8
C5 A:5HO403 2.7 36.0 0.8
HD11 A:ILE300 3.1 31.8 1.0
HG12 A:ILE300 3.5 32.7 1.0
HD13 A:ILE300 3.6 31.8 1.0
CD1 A:ILE300 3.7 26.5 1.0
HH A:TYR226 3.8 15.1 1.0
CZ A:TYR226 3.8 10.4 1.0
OH A:TYR226 3.9 12.6 1.0
HE1 A:TYR226 3.9 12.8 1.0
CE1 A:TYR226 3.9 10.7 1.0
N1 A:5HO403 4.0 36.3 0.8
C2 A:5HO403 4.0 36.4 0.8
CG1 A:ILE300 4.1 27.3 1.0
C1 A:5HO403 4.4 36.3 0.8
HG13 A:ILE300 4.5 32.7 1.0
CE2 A:TYR226 4.5 10.3 1.0
O A:GLY80 4.5 31.8 1.0
CD1 A:TYR226 4.6 10.5 1.0
HD12 A:ILE300 4.6 31.8 1.0
O A:HOH744 4.6 23.0 1.0
HA A:ASP81 4.7 35.8 1.0
HE2 A:TYR226 4.8 12.4 1.0
HD1 A:TYR226 4.9 12.6 1.0
HD12 A:ILE304 5.0 13.1 1.0

Reference:

N.Radeva, A.Heine, G.Klebe. Crystallographic Fragment Screening of An Entire Library To Be Published.
Page generated: Fri Jul 26 06:50:21 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy