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Chlorine in PDB 5dq2: Endothiapepsin in Complex with Fragment 48

Enzymatic activity of Endothiapepsin in Complex with Fragment 48

All present enzymatic activity of Endothiapepsin in Complex with Fragment 48:
3.4.23.22;

Protein crystallography data

The structure of Endothiapepsin in Complex with Fragment 48, PDB code: 5dq2 was solved by N.Radeva, M.Uehlein, M.Weiss, A.Heine, G.Klebe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.14 / 1.51
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 45.614, 72.433, 52.747, 90.00, 108.94, 90.00
R / Rfree (%) 12.1 / 16.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Endothiapepsin in Complex with Fragment 48 (pdb code 5dq2). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Endothiapepsin in Complex with Fragment 48, PDB code: 5dq2:

Chlorine binding site 1 out of 1 in 5dq2

Go back to Chlorine Binding Sites List in 5dq2
Chlorine binding site 1 out of 1 in the Endothiapepsin in Complex with Fragment 48


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Endothiapepsin in Complex with Fragment 48 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:37.5
occ:0.81
CL A:5HO403 0.0 37.5 0.8
C4 A:5HO403 1.7 36.3 0.8
C3 A:5HO403 2.7 36.1 0.8
C5 A:5HO403 2.7 36.0 0.8
HD11 A:ILE300 3.1 31.8 1.0
HG12 A:ILE300 3.5 32.7 1.0
HD13 A:ILE300 3.6 31.8 1.0
CD1 A:ILE300 3.7 26.5 1.0
HH A:TYR226 3.8 15.1 1.0
CZ A:TYR226 3.8 10.4 1.0
OH A:TYR226 3.9 12.6 1.0
HE1 A:TYR226 3.9 12.8 1.0
CE1 A:TYR226 3.9 10.7 1.0
N1 A:5HO403 4.0 36.3 0.8
C2 A:5HO403 4.0 36.4 0.8
CG1 A:ILE300 4.1 27.3 1.0
C1 A:5HO403 4.4 36.3 0.8
HG13 A:ILE300 4.5 32.7 1.0
CE2 A:TYR226 4.5 10.3 1.0
O A:GLY80 4.5 31.8 1.0
CD1 A:TYR226 4.6 10.5 1.0
HD12 A:ILE300 4.6 31.8 1.0
O A:HOH744 4.6 23.0 1.0
HA A:ASP81 4.7 35.8 1.0
HE2 A:TYR226 4.8 12.4 1.0
HD1 A:TYR226 4.9 12.6 1.0
HD12 A:ILE304 5.0 13.1 1.0

Reference:

N.Radeva, A.Heine, G.Klebe. Crystallographic Fragment Screening of An Entire Library To Be Published.
Page generated: Sat Dec 12 11:39:21 2020

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