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Chlorine in PDB 5ds7: 2.0 A Structure of Cpii, A Nitrogen Regulatory Pii-Like Protein From Thiomonas Intermedia K12, Bound Amp

Protein crystallography data

The structure of 2.0 A Structure of Cpii, A Nitrogen Regulatory Pii-Like Protein From Thiomonas Intermedia K12, Bound Amp, PDB code: 5ds7 was solved by N.M.Wheatley, J.Ngo, D.Cascio, M.R.Sawaya, T.O.Yeates, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.57 / 2.00
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 51.870, 75.650, 80.270, 90.00, 90.00, 90.00
R / Rfree (%) 23.1 / 25.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the 2.0 A Structure of Cpii, A Nitrogen Regulatory Pii-Like Protein From Thiomonas Intermedia K12, Bound Amp (pdb code 5ds7). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the 2.0 A Structure of Cpii, A Nitrogen Regulatory Pii-Like Protein From Thiomonas Intermedia K12, Bound Amp, PDB code: 5ds7:

Chlorine binding site 1 out of 1 in 5ds7

Go back to Chlorine Binding Sites List in 5ds7
Chlorine binding site 1 out of 1 in the 2.0 A Structure of Cpii, A Nitrogen Regulatory Pii-Like Protein From Thiomonas Intermedia K12, Bound Amp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of 2.0 A Structure of Cpii, A Nitrogen Regulatory Pii-Like Protein From Thiomonas Intermedia K12, Bound Amp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl202

b:27.4
occ:1.00
O B:HOH312 2.6 28.6 1.0
NH2 B:ARG102 3.0 21.0 1.0
NE B:ARG102 3.3 21.9 1.0
N A:VAL93 3.5 20.5 1.0
CZ B:ARG102 3.6 21.6 1.0
CA A:VAL92 3.7 20.8 1.0
CZ B:PHE106 3.7 25.4 1.0
CE2 B:PHE106 3.9 25.9 1.0
CB A:VAL92 4.0 20.8 1.0
C A:VAL92 4.1 20.6 1.0
O A:VAL93 4.1 21.6 1.0
CG1 A:VAL92 4.2 20.9 1.0
CB B:ARG102 4.5 22.6 1.0
O A:GLY91 4.5 20.6 1.0
CA A:VAL93 4.5 20.3 1.0
CD B:ARG102 4.5 22.5 1.0
CD B:LYS105 4.6 27.9 1.0
CG B:ARG102 4.7 22.8 1.0
N B:ARG102 4.7 22.8 1.0
C A:VAL93 4.7 20.8 1.0
CB A:VAL93 4.8 20.5 1.0
N B:GLY101 4.9 24.2 1.0
CB B:VAL100 4.9 20.9 1.0
N A:VAL92 4.9 20.4 1.0
NH1 B:ARG102 4.9 22.1 1.0
CE1 B:PHE106 5.0 24.7 1.0
CE B:LYS105 5.0 27.3 1.0

Reference:

N.M.Wheatley, K.D.Eden, J.Ngo, J.S.Rosinski, M.R.Sawaya, D.Cascio, M.Collazo, H.Hoveida, W.L.Hubbell, T.O.Yeates. A Pii-Like Protein Regulated By Bicarbonate: Structural and Biochemical Studies of the Carboxysome-Associated Cpii Protein. J.Mol.Biol. V. 428 4013 2016.
ISSN: ESSN 1089-8638
PubMed: 27464895
DOI: 10.1016/J.JMB.2016.07.015
Page generated: Fri Jul 26 06:52:54 2024

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