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Chlorine in PDB 5dt9: Crystal Structure of A Putative D-Erythronate-4-Phosphate Dehydrogenase From Vibrio Cholerae

Enzymatic activity of Crystal Structure of A Putative D-Erythronate-4-Phosphate Dehydrogenase From Vibrio Cholerae

All present enzymatic activity of Crystal Structure of A Putative D-Erythronate-4-Phosphate Dehydrogenase From Vibrio Cholerae:
1.1.1.290;

Protein crystallography data

The structure of Crystal Structure of A Putative D-Erythronate-4-Phosphate Dehydrogenase From Vibrio Cholerae, PDB code: 5dt9 was solved by P.J.Stogios, T.Skarina, A.Savchenko, W.F.Anderson, Center For Structuralgenomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 2.66
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 145.775, 145.775, 62.031, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 24

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Putative D-Erythronate-4-Phosphate Dehydrogenase From Vibrio Cholerae (pdb code 5dt9). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of A Putative D-Erythronate-4-Phosphate Dehydrogenase From Vibrio Cholerae, PDB code: 5dt9:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5dt9

Go back to Chlorine Binding Sites List in 5dt9
Chlorine binding site 1 out of 2 in the Crystal Structure of A Putative D-Erythronate-4-Phosphate Dehydrogenase From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Putative D-Erythronate-4-Phosphate Dehydrogenase From Vibrio Cholerae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl412

b:87.7
occ:1.00
N A:ALA20 3.3 57.7 1.0
CA A:TYR17 3.4 57.6 1.0
CB A:ALA20 3.4 61.9 1.0
C A:TYR17 3.7 54.4 1.0
O A:HOH573 3.8 41.4 1.0
N A:GLN19 4.0 53.4 1.0
CA A:ALA20 4.0 60.9 1.0
N A:TYR17 4.0 56.1 1.0
N A:ALA18 4.0 52.5 1.0
CB A:GLN19 4.2 56.1 1.0
O A:TYR17 4.2 54.6 1.0
C A:GLN19 4.3 56.4 1.0
CA A:GLN19 4.3 54.3 1.0
CB A:TYR17 4.5 60.5 1.0
C A:ALA18 4.7 52.8 1.0
CD1 A:TYR17 4.8 69.2 1.0
CA A:ALA18 5.0 51.2 1.0

Chlorine binding site 2 out of 2 in 5dt9

Go back to Chlorine Binding Sites List in 5dt9
Chlorine binding site 2 out of 2 in the Crystal Structure of A Putative D-Erythronate-4-Phosphate Dehydrogenase From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Putative D-Erythronate-4-Phosphate Dehydrogenase From Vibrio Cholerae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl413

b:74.3
occ:1.00
OD2 A:ASP77 3.4 91.4 1.0
CG A:ASP77 3.7 85.3 1.0
NH1 A:ARG215 3.9 68.0 1.0
CA A:GLY75 4.0 56.2 1.0
NH2 A:ARG215 4.1 70.0 1.0
CB A:ASP77 4.1 75.1 1.0
OD1 A:ASP77 4.2 89.8 1.0
N A:MET76 4.3 56.8 1.0
CZ A:ARG215 4.4 66.6 1.0
N A:ASP77 4.5 62.5 1.0
C A:GLY75 4.6 55.6 1.0
CA A:ASP77 4.9 66.4 1.0

Reference:

P.J.Stogios, P.J.Stogios, T.Skarina, A.Savchenko, W.F.Anderson, Center For Structuralgenomics Of Infectious Diseases (Csgid). N/A N/A.
Page generated: Sat Dec 12 11:39:35 2020

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