Atomistry » Chlorine » PDB 5e1z-5ead » 5e2h
Atomistry »
  Chlorine »
    PDB 5e1z-5ead »
      5e2h »

Chlorine in PDB 5e2h: Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis

Enzymatic activity of Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis

All present enzymatic activity of Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis:
3.5.2.6;

Protein crystallography data

The structure of Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis, PDB code: 5e2h was solved by Y.Kim, C.Hatzos-Skintges, M.Endres, G.Babnigg, A.Joachimiak, Midwestcenter For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.55 / 1.80
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 127.779, 73.682, 113.413, 90.00, 90.19, 90.00
R / Rfree (%) 16.4 / 19.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis (pdb code 5e2h). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis, PDB code: 5e2h:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 5e2h

Go back to Chlorine Binding Sites List in 5e2h
Chlorine binding site 1 out of 6 in the Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:45.4
occ:1.00
 O A:HOH590 3.1 46.3 1.0
N A:VAL185 3.2 27.3 1.0
CG2 A:VAL185 3.8 25.1 1.0
CB A:VAL185 3.8 27.6 1.0
NZ A:LYS219 3.9 30.9 1.0
CE A:LYS219 3.9 31.5 1.0
CA A:ASP184 4.0 32.0 1.0
C A:ASP184 4.1 29.9 1.0
CA A:VAL185 4.1 28.7 1.0
O A:VAL183 4.1 34.6 1.0
CE2 A:TYR193 4.3 27.8 1.0
O A:VAL185 4.6 33.5 1.0
CE A:MSE190 4.8 41.4 1.0
C A:VAL185 4.9 33.3 1.0
OD1 A:ASP184 4.9 41.0 1.0
CB A:ASP184 4.9 37.5 1.0
C A:VAL183 4.9 32.4 1.0
N A:ASP184 4.9 29.3 1.0
CD2 A:TYR193 5.0 28.5 1.0

Chlorine binding site 2 out of 6 in 5e2h

Go back to Chlorine Binding Sites List in 5e2h
Chlorine binding site 2 out of 6 in the Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:37.0
occ:1.00
 O A:HOH550 3.0 31.9 1.0
N A:PHE115 3.3 33.4 1.0
CA A:GLN114 3.5 35.4 1.0
CB A:GLN114 3.7 39.8 1.0
CB A:ASN146 3.8 24.8 1.0
CD2 A:PHE115 3.9 35.5 1.0
C A:GLN114 4.0 35.8 1.0
CG A:GLN114 4.1 43.2 1.0
CD A:PRO147 4.3 30.7 1.0
CB A:PHE115 4.3 35.9 1.0
ND2 A:ASN146 4.4 31.5 1.0
CA A:PHE115 4.4 35.5 1.0
CE2 A:TYR216 4.4 29.8 1.0
CG A:ASN146 4.5 29.1 1.0
CG A:PHE115 4.5 33.2 1.0
O A:LEU113 4.6 30.9 1.0
CG A:PRO147 4.7 35.5 1.0
O A:VAL210 4.7 30.3 1.0
CE2 A:PHE115 4.7 37.3 1.0
N A:GLN114 4.8 33.8 1.0
OH A:TYR216 4.8 29.8 1.0
N A:PRO147 4.9 30.6 1.0

Chlorine binding site 3 out of 6 in 5e2h

Go back to Chlorine Binding Sites List in 5e2h
Chlorine binding site 3 out of 6 in the Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl401

b:39.2
occ:1.00
 N B:VAL185 3.2 29.4 1.0
NZ B:LYS219 3.7 29.4 1.0
CG2 B:VAL185 3.9 26.8 1.0
CB B:VAL185 3.9 28.0 1.0
CA B:ASP184 4.0 35.2 1.0
C B:ASP184 4.1 31.9 1.0
O B:VAL183 4.1 34.5 1.0
CA B:VAL185 4.1 28.4 1.0
CE B:LYS219 4.2 32.0 1.0
CD B:LYS219 4.2 34.5 1.0
CE2 B:TYR193 4.3 28.2 1.0
OD1 B:ASP184 4.6 47.8 1.0
O B:VAL185 4.7 33.6 1.0
CE B:MSE190 4.8 39.3 1.0
CB B:ASP184 4.9 41.2 1.0
N B:ASP184 4.9 31.5 1.0
C B:VAL183 4.9 33.5 1.0
C B:VAL185 4.9 31.5 1.0
OH B:TYR193 5.0 24.9 1.0

Chlorine binding site 4 out of 6 in 5e2h

Go back to Chlorine Binding Sites List in 5e2h
Chlorine binding site 4 out of 6 in the Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl402

b:36.8
occ:1.00
 O B:HOH529 3.1 30.6 1.0
N B:PHE115 3.3 34.5 1.0
CA B:GLN114 3.5 35.7 1.0
CB B:GLN114 3.7 40.1 1.0
CB B:ASN146 3.8 29.1 1.0
C B:GLN114 3.9 35.4 1.0
CG B:GLN114 4.0 46.2 1.0
CD2 B:PHE115 4.0 35.2 1.0
CB B:PHE115 4.4 36.9 1.0
ND2 B:ASN146 4.4 33.6 1.0
CD B:PRO147 4.4 29.3 1.0
CA B:PHE115 4.4 36.1 1.0
CE2 B:TYR216 4.4 30.2 1.0
CG B:ASN146 4.5 32.9 1.0
O B:LEU113 4.5 30.1 1.0
CG B:PHE115 4.6 34.9 1.0
CG B:PRO147 4.8 31.1 1.0
N B:GLN114 4.8 35.4 1.0
O B:VAL210 4.8 31.1 1.0
OH B:TYR216 4.9 28.2 1.0
CD B:GLN114 4.9 54.8 1.0
OE1 B:GLN114 4.9 58.9 1.0
CE2 B:PHE115 4.9 34.6 1.0
N B:PRO147 4.9 30.5 1.0

Chlorine binding site 5 out of 6 in 5e2h

Go back to Chlorine Binding Sites List in 5e2h
Chlorine binding site 5 out of 6 in the Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl401

b:43.3
occ:1.00
 N C:VAL185 3.2 29.3 1.0
CB C:VAL185 3.8 26.9 1.0
CG2 C:VAL185 3.8 26.5 1.0
NZ C:LYS219 3.9 30.0 1.0
CA C:ASP184 4.0 33.9 1.0
C C:ASP184 4.0 31.8 1.0
CA C:VAL185 4.0 28.4 1.0
O C:VAL183 4.1 34.4 1.0
CE C:LYS219 4.1 33.2 1.0
CE2 C:TYR193 4.3 27.1 1.0
CD C:LYS219 4.4 31.7 1.0
O C:VAL185 4.6 36.2 1.0
C C:VAL185 4.8 34.0 1.0
OD1 C:ASP184 4.9 46.0 1.0
CB C:ASP184 4.9 40.3 1.0
N C:ASP184 4.9 31.3 1.0
C C:VAL183 4.9 33.3 1.0
CE C:MSE190 4.9 41.6 1.0
CD2 C:TYR193 5.0 26.3 1.0

Chlorine binding site 6 out of 6 in 5e2h

Go back to Chlorine Binding Sites List in 5e2h
Chlorine binding site 6 out of 6 in the Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl402

b:38.5
occ:1.00
 O C:HOH640 3.0 46.4 1.0
O C:HOH549 3.1 31.7 1.0
N C:PHE115 3.2 34.1 1.0
CA C:GLN114 3.5 36.5 1.0
CB C:GLN114 3.6 40.4 1.0
C C:GLN114 3.8 38.0 1.0
CB C:ASN146 3.9 29.3 1.0
CD2 C:PHE115 3.9 35.7 1.0
CG C:GLN114 4.1 45.4 1.0
CB C:PHE115 4.2 36.2 1.0
CA C:PHE115 4.3 36.9 1.0
ND2 C:ASN146 4.4 34.7 1.0
CG C:PHE115 4.4 35.6 1.0
CD C:PRO147 4.4 35.0 1.0
CG C:ASN146 4.5 32.3 1.0
O C:LEU113 4.5 29.2 1.0
CE2 C:TYR216 4.6 30.4 1.0
CG C:PRO147 4.7 38.7 1.0
N C:GLN114 4.7 33.7 1.0
CE2 C:PHE115 4.8 37.8 1.0
O C:VAL210 4.8 33.9 1.0
NE2 C:GLN114 4.8 54.6 1.0
OH C:TYR216 4.9 25.6 1.0
N C:PRO147 4.9 34.4 1.0
O C:PHE115 4.9 38.7 1.0
CD C:GLN114 5.0 52.5 1.0

Reference:

Y.Kim, C.Hatzos-Skintges, M.Endres, G.Babnigg, A.Joachimiak. Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis To Be Published.
Page generated: Fri Jul 26 07:04:41 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy