Atomistry » Chlorine » PDB 5e20-5eae » 5e2h
Atomistry »
  Chlorine »
    PDB 5e20-5eae »
      5e2h »

Chlorine in PDB 5e2h: Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis

Enzymatic activity of Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis

All present enzymatic activity of Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis:
3.5.2.6;

Protein crystallography data

The structure of Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis, PDB code: 5e2h was solved by Y.Kim, C.Hatzos-Skintges, M.Endres, G.Babnigg, A.Joachimiak, Midwestcenter For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.55 / 1.80
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 127.779, 73.682, 113.413, 90.00, 90.19, 90.00
R / Rfree (%) 16.4 / 19.7

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis (pdb code 5e2h). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis, PDB code: 5e2h:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 5e2h

Go back to Chlorine Binding Sites List in 5e2h
Chlorine binding site 1 out of 6 in the Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:45.4
occ:1.00
 O A:HOH590 3.1 46.3 1.0
N A:VAL185 3.2 27.3 1.0
CG2 A:VAL185 3.8 25.1 1.0
CB A:VAL185 3.8 27.6 1.0
NZ A:LYS219 3.9 30.9 1.0
CE A:LYS219 3.9 31.5 1.0
CA A:ASP184 4.0 32.0 1.0
C A:ASP184 4.1 29.9 1.0
CA A:VAL185 4.1 28.7 1.0
O A:VAL183 4.1 34.6 1.0
CE2 A:TYR193 4.3 27.8 1.0
O A:VAL185 4.6 33.5 1.0
CE A:MSE190 4.8 41.4 1.0
C A:VAL185 4.9 33.3 1.0
OD1 A:ASP184 4.9 41.0 1.0
CB A:ASP184 4.9 37.5 1.0
C A:VAL183 4.9 32.4 1.0
N A:ASP184 4.9 29.3 1.0
CD2 A:TYR193 5.0 28.5 1.0

Chlorine binding site 2 out of 6 in 5e2h

Go back to Chlorine Binding Sites List in 5e2h
Chlorine binding site 2 out of 6 in the Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl402

b:37.0
occ:1.00
 O A:HOH550 3.0 31.9 1.0
N A:PHE115 3.3 33.4 1.0
CA A:GLN114 3.5 35.4 1.0
CB A:GLN114 3.7 39.8 1.0
CB A:ASN146 3.8 24.8 1.0
CD2 A:PHE115 3.9 35.5 1.0
C A:GLN114 4.0 35.8 1.0
CG A:GLN114 4.1 43.2 1.0
CD A:PRO147 4.3 30.7 1.0
CB A:PHE115 4.3 35.9 1.0
ND2 A:ASN146 4.4 31.5 1.0
CA A:PHE115 4.4 35.5 1.0
CE2 A:TYR216 4.4 29.8 1.0
CG A:ASN146 4.5 29.1 1.0
CG A:PHE115 4.5 33.2 1.0
O A:LEU113 4.6 30.9 1.0
CG A:PRO147 4.7 35.5 1.0
O A:VAL210 4.7 30.3 1.0
CE2 A:PHE115 4.7 37.3 1.0
N A:GLN114 4.8 33.8 1.0
OH A:TYR216 4.8 29.8 1.0
N A:PRO147 4.9 30.6 1.0

Chlorine binding site 3 out of 6 in 5e2h

Go back to Chlorine Binding Sites List in 5e2h
Chlorine binding site 3 out of 6 in the Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl401

b:39.2
occ:1.00
 N B:VAL185 3.2 29.4 1.0
NZ B:LYS219 3.7 29.4 1.0
CG2 B:VAL185 3.9 26.8 1.0
CB B:VAL185 3.9 28.0 1.0
CA B:ASP184 4.0 35.2 1.0
C B:ASP184 4.1 31.9 1.0
O B:VAL183 4.1 34.5 1.0
CA B:VAL185 4.1 28.4 1.0
CE B:LYS219 4.2 32.0 1.0
CD B:LYS219 4.2 34.5 1.0
CE2 B:TYR193 4.3 28.2 1.0
OD1 B:ASP184 4.6 47.8 1.0
O B:VAL185 4.7 33.6 1.0
CE B:MSE190 4.8 39.3 1.0
CB B:ASP184 4.9 41.2 1.0
N B:ASP184 4.9 31.5 1.0
C B:VAL183 4.9 33.5 1.0
C B:VAL185 4.9 31.5 1.0
OH B:TYR193 5.0 24.9 1.0

Chlorine binding site 4 out of 6 in 5e2h

Go back to Chlorine Binding Sites List in 5e2h
Chlorine binding site 4 out of 6 in the Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl402

b:36.8
occ:1.00
 O B:HOH529 3.1 30.6 1.0
N B:PHE115 3.3 34.5 1.0
CA B:GLN114 3.5 35.7 1.0
CB B:GLN114 3.7 40.1 1.0
CB B:ASN146 3.8 29.1 1.0
C B:GLN114 3.9 35.4 1.0
CG B:GLN114 4.0 46.2 1.0
CD2 B:PHE115 4.0 35.2 1.0
CB B:PHE115 4.4 36.9 1.0
ND2 B:ASN146 4.4 33.6 1.0
CD B:PRO147 4.4 29.3 1.0
CA B:PHE115 4.4 36.1 1.0
CE2 B:TYR216 4.4 30.2 1.0
CG B:ASN146 4.5 32.9 1.0
O B:LEU113 4.5 30.1 1.0
CG B:PHE115 4.6 34.9 1.0
CG B:PRO147 4.8 31.1 1.0
N B:GLN114 4.8 35.4 1.0
O B:VAL210 4.8 31.1 1.0
OH B:TYR216 4.9 28.2 1.0
CD B:GLN114 4.9 54.8 1.0
OE1 B:GLN114 4.9 58.9 1.0
CE2 B:PHE115 4.9 34.6 1.0
N B:PRO147 4.9 30.5 1.0

Chlorine binding site 5 out of 6 in 5e2h

Go back to Chlorine Binding Sites List in 5e2h
Chlorine binding site 5 out of 6 in the Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl401

b:43.3
occ:1.00
 N C:VAL185 3.2 29.3 1.0
CB C:VAL185 3.8 26.9 1.0
CG2 C:VAL185 3.8 26.5 1.0
NZ C:LYS219 3.9 30.0 1.0
CA C:ASP184 4.0 33.9 1.0
C C:ASP184 4.0 31.8 1.0
CA C:VAL185 4.0 28.4 1.0
O C:VAL183 4.1 34.4 1.0
CE C:LYS219 4.1 33.2 1.0
CE2 C:TYR193 4.3 27.1 1.0
CD C:LYS219 4.4 31.7 1.0
O C:VAL185 4.6 36.2 1.0
C C:VAL185 4.8 34.0 1.0
OD1 C:ASP184 4.9 46.0 1.0
CB C:ASP184 4.9 40.3 1.0
N C:ASP184 4.9 31.3 1.0
C C:VAL183 4.9 33.3 1.0
CE C:MSE190 4.9 41.6 1.0
CD2 C:TYR193 5.0 26.3 1.0

Chlorine binding site 6 out of 6 in 5e2h

Go back to Chlorine Binding Sites List in 5e2h
Chlorine binding site 6 out of 6 in the Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl402

b:38.5
occ:1.00
 O C:HOH640 3.0 46.4 1.0
O C:HOH549 3.1 31.7 1.0
N C:PHE115 3.2 34.1 1.0
CA C:GLN114 3.5 36.5 1.0
CB C:GLN114 3.6 40.4 1.0
C C:GLN114 3.8 38.0 1.0
CB C:ASN146 3.9 29.3 1.0
CD2 C:PHE115 3.9 35.7 1.0
CG C:GLN114 4.1 45.4 1.0
CB C:PHE115 4.2 36.2 1.0
CA C:PHE115 4.3 36.9 1.0
ND2 C:ASN146 4.4 34.7 1.0
CG C:PHE115 4.4 35.6 1.0
CD C:PRO147 4.4 35.0 1.0
CG C:ASN146 4.5 32.3 1.0
O C:LEU113 4.5 29.2 1.0
CE2 C:TYR216 4.6 30.4 1.0
CG C:PRO147 4.7 38.7 1.0
N C:GLN114 4.7 33.7 1.0
CE2 C:PHE115 4.8 37.8 1.0
O C:VAL210 4.8 33.9 1.0
NE2 C:GLN114 4.8 54.6 1.0
OH C:TYR216 4.9 25.6 1.0
N C:PRO147 4.9 34.4 1.0
O C:PHE115 4.9 38.7 1.0
CD C:GLN114 5.0 52.5 1.0

Reference:

Y.Kim, C.Hatzos-Skintges, M.Endres, G.Babnigg, A.Joachimiak. Crystal Structure of D-Alanine Carboxypeptidase Ampc From Mycobacterium Smegmatis To Be Published.
Page generated: Fri Jul 26 07:04:41 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy