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Chlorine in PDB 5ew4: Crystal Structure of C9ORF72 Antisense Ccccgg Repeat Rna Associated with Lou Gehrig'S Disease and Frontotemporal Dementia, Crystallized with SR2+

Protein crystallography data

The structure of Crystal Structure of C9ORF72 Antisense Ccccgg Repeat Rna Associated with Lou Gehrig'S Disease and Frontotemporal Dementia, Crystallized with SR2+, PDB code: 5ew4 was solved by D.R.Tomchick, D.W.Dodd, K.T.Gagnon, D.R.Corey, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.92 / 1.47
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 41.020, 47.615, 58.900, 90.00, 90.00, 90.00
R / Rfree (%) 21.6 / 23.9

Other elements in 5ew4:

The structure of Crystal Structure of C9ORF72 Antisense Ccccgg Repeat Rna Associated with Lou Gehrig'S Disease and Frontotemporal Dementia, Crystallized with SR2+ also contains other interesting chemical elements:

Strontium (Sr) 1 atom
Magnesium (Mg) 2 atoms
Potassium (K) 9 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of C9ORF72 Antisense Ccccgg Repeat Rna Associated with Lou Gehrig'S Disease and Frontotemporal Dementia, Crystallized with SR2+ (pdb code 5ew4). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of C9ORF72 Antisense Ccccgg Repeat Rna Associated with Lou Gehrig'S Disease and Frontotemporal Dementia, Crystallized with SR2+, PDB code: 5ew4:

Chlorine binding site 1 out of 1 in 5ew4

Go back to Chlorine Binding Sites List in 5ew4
Chlorine binding site 1 out of 1 in the Crystal Structure of C9ORF72 Antisense Ccccgg Repeat Rna Associated with Lou Gehrig'S Disease and Frontotemporal Dementia, Crystallized with SR2+


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of C9ORF72 Antisense Ccccgg Repeat Rna Associated with Lou Gehrig'S Disease and Frontotemporal Dementia, Crystallized with SR2+ within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl111

b:20.6
occ:1.00
K B:K106 2.4 18.4 1.0
O B:HOH274 2.5 31.3 1.0
O B:HOH224 2.6 21.0 1.0
O6 B:G6 2.8 23.5 1.0
O B:HOH280 2.8 31.5 1.0
O B:HOH236 3.1 33.0 1.0
O6 B:G5 3.2 26.6 1.0
H42 A:C19 3.5 19.1 1.0
O A:HOH223 3.6 36.5 1.0
C6 B:G6 3.8 23.7 1.0
H41 B:C7 3.9 31.7 1.0
C6 B:G5 4.0 27.0 1.0
O B:HOH283 4.1 27.4 1.0
N7 B:G6 4.1 25.8 1.0
H41 A:C19 4.1 19.1 1.0
H42 A:C20 4.1 24.2 1.0
N4 A:C19 4.2 15.9 1.0
H42 B:C7 4.2 31.7 1.0
N4 B:C7 4.3 26.4 1.0
C5 B:G6 4.3 24.7 1.0
O B:HOH223 4.5 39.6 1.0
O6 A:G18 4.5 19.5 1.0
C5 B:G5 4.5 27.5 1.0
N7 B:G5 4.6 28.2 1.0
N4 A:C20 4.7 20.1 1.0
O B:HOH217 4.7 31.9 1.0
N1 B:G5 4.9 26.2 1.0
H41 A:C20 4.9 24.2 1.0
H1 B:G5 5.0 31.4 1.0

Reference:

D.W.Dodd, D.R.Tomchick, D.R.Corey, K.T.Gagnon. Pathogenic C9ORF72 Antisense Repeat Rna Forms A Double Helix with Tandem C:C Mismatches. Biochemistry V. 55 1283 2016.
ISSN: ISSN 0006-2960
PubMed: 26878348
DOI: 10.1021/ACS.BIOCHEM.6B00136
Page generated: Fri Jul 26 07:32:48 2024

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