Atomistry » Chlorine » PDB 5esg-5f00 » 5ewn
Atomistry »
  Chlorine »
    PDB 5esg-5f00 »
      5ewn »

Chlorine in PDB 5ewn: Crystal Structure of the Human Astrovirus 1 Capsid Protein Core Domain at 2.6 A Resolution

Protein crystallography data

The structure of Crystal Structure of the Human Astrovirus 1 Capsid Protein Core Domain at 2.6 A Resolution, PDB code: 5ewn was solved by R.L.York, P.A.Yousefi, W.Bogdanoff, S.Haile, S.Tripathi, R.M.Dubois, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.47 / 2.60
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 66.243, 71.098, 158.911, 90.00, 90.00, 90.00
R / Rfree (%) 19.2 / 23.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Human Astrovirus 1 Capsid Protein Core Domain at 2.6 A Resolution (pdb code 5ewn). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of the Human Astrovirus 1 Capsid Protein Core Domain at 2.6 A Resolution, PDB code: 5ewn:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 5ewn

Go back to Chlorine Binding Sites List in 5ewn
Chlorine binding site 1 out of 4 in the Crystal Structure of the Human Astrovirus 1 Capsid Protein Core Domain at 2.6 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Human Astrovirus 1 Capsid Protein Core Domain at 2.6 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl501

b:30.0
occ:1.00
OG1 A:THR100 2.9 26.2 1.0
O A:HOH648 3.2 25.8 1.0
N A:TRP173 3.5 25.6 1.0
CB A:THR100 3.5 19.4 1.0
CA A:SER172 3.7 27.5 1.0
C A:SER172 4.0 26.3 1.0
CB A:SER172 4.1 32.6 1.0
CG2 A:THR100 4.2 16.1 1.0
CB A:TRP173 4.3 24.2 1.0
CA A:TRP173 4.4 23.2 1.0
CL A:CL502 4.7 30.0 1.0
CA A:THR100 4.8 17.5 1.0
O A:THR171 4.9 66.2 1.0
N A:THR100 4.9 26.2 1.0

Chlorine binding site 2 out of 4 in 5ewn

Go back to Chlorine Binding Sites List in 5ewn
Chlorine binding site 2 out of 4 in the Crystal Structure of the Human Astrovirus 1 Capsid Protein Core Domain at 2.6 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Human Astrovirus 1 Capsid Protein Core Domain at 2.6 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl502

b:30.0
occ:1.00
CB A:SER172 3.6 32.6 1.0
N A:SER174 3.6 21.7 1.0
CB A:SER174 3.6 20.2 1.0
OG A:SER174 3.7 37.9 1.0
N A:TRP173 3.8 25.6 1.0
OG A:SER172 4.1 25.6 1.0
CB A:TRP173 4.2 24.2 1.0
CA A:SER174 4.2 20.6 1.0
CA A:TRP173 4.3 23.2 1.0
C A:TRP173 4.4 22.9 1.0
C A:SER172 4.5 26.3 1.0
CA A:SER172 4.6 27.5 1.0
CL A:CL501 4.7 30.0 1.0

Chlorine binding site 3 out of 4 in 5ewn

Go back to Chlorine Binding Sites List in 5ewn
Chlorine binding site 3 out of 4 in the Crystal Structure of the Human Astrovirus 1 Capsid Protein Core Domain at 2.6 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the Human Astrovirus 1 Capsid Protein Core Domain at 2.6 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl501

b:30.0
occ:1.00
N B:TRP173 3.4 16.8 1.0
OG1 B:THR100 3.5 31.3 1.0
CA B:SER172 3.8 13.6 1.0
CB B:SER172 3.9 9.4 1.0
CB B:THR100 4.0 11.6 1.0
C B:SER172 4.1 18.3 1.0
CB B:TRP173 4.2 24.7 1.0
CA B:TRP173 4.4 26.5 1.0
CL B:CL502 4.5 30.0 1.0
CG2 B:THR100 4.9 21.4 1.0

Chlorine binding site 4 out of 4 in 5ewn

Go back to Chlorine Binding Sites List in 5ewn
Chlorine binding site 4 out of 4 in the Crystal Structure of the Human Astrovirus 1 Capsid Protein Core Domain at 2.6 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of the Human Astrovirus 1 Capsid Protein Core Domain at 2.6 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl502

b:30.0
occ:1.00
N B:SER174 3.6 24.0 1.0
CB B:SER172 3.7 9.4 1.0
OG B:SER174 3.8 35.7 1.0
OG B:SER172 3.8 24.2 1.0
N B:TRP173 4.0 16.8 1.0
CB B:SER174 4.1 30.9 1.0
CB B:TRP173 4.2 24.7 1.0
CA B:TRP173 4.4 26.5 1.0
CA B:SER174 4.5 33.3 1.0
CL B:CL501 4.5 30.0 1.0
C B:TRP173 4.5 25.0 1.0
C B:SER172 4.6 18.3 1.0
CA B:SER172 4.7 13.6 1.0

Reference:

R.L.York, P.A.Yousefi, W.Bogdanoff, S.Haile, S.Tripathi, R.M.Dubois. Structural, Mechanistic, and Antigenic Characterization of the Human Astrovirus Capsid. J.Virol. V. 90 2254 2015.
ISSN: ESSN 1098-5514
PubMed: 26656707
DOI: 10.1128/JVI.02666-15
Page generated: Sat Dec 12 11:42:13 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy