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Chlorine in PDB 5eyf: Crystal Structure of Solute-Binding Protein From Enterococcus Faecium with Bound Glutamate

Protein crystallography data

The structure of Crystal Structure of Solute-Binding Protein From Enterococcus Faecium with Bound Glutamate, PDB code: 5eyf was solved by N.Maltseva, Y.Kim, R.Mulligan, S.Shatsman, W.F.Anderson, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.57 / 1.52
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 36.405, 115.434, 53.825, 90.00, 101.93, 90.00
R / Rfree (%) 14.6 / 18.1

Other elements in 5eyf:

The structure of Crystal Structure of Solute-Binding Protein From Enterococcus Faecium with Bound Glutamate also contains other interesting chemical elements:

Magnesium (Mg) 3 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Solute-Binding Protein From Enterococcus Faecium with Bound Glutamate (pdb code 5eyf). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Solute-Binding Protein From Enterococcus Faecium with Bound Glutamate, PDB code: 5eyf:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5eyf

Go back to Chlorine Binding Sites List in 5eyf
Chlorine binding site 1 out of 2 in the Crystal Structure of Solute-Binding Protein From Enterococcus Faecium with Bound Glutamate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Solute-Binding Protein From Enterococcus Faecium with Bound Glutamate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl304

b:46.3
occ:1.00
MG B:MG303 2.0 17.3 0.8
O B:HOH448 2.6 22.8 1.0
OD2 B:ASP255 2.7 25.2 1.0
O B:HOH411 2.8 22.4 1.0
OD1 A:ASP116 2.9 21.1 1.0
O B:HOH523 2.9 28.1 1.0
OXT B:GLU271 3.2 20.4 0.5
OXT B:GLU271 3.3 20.4 0.5
CG B:ASP255 3.6 23.2 1.0
OD1 B:ASP255 3.7 26.3 1.0
CG A:ASP116 3.8 21.1 1.0
CA B:GLU271 3.9 17.5 0.5
CE B:LYS269 3.9 22.6 1.0
C B:GLU271 3.9 20.6 0.5
NZ B:LYS269 3.9 23.5 1.0
CA B:GLU271 3.9 17.2 0.5
C B:GLU271 4.0 20.4 0.5
O B:HOH427 4.0 24.0 1.0
OD2 A:ASP116 4.1 23.5 1.0
O B:VAL270 4.4 16.8 1.0
CB B:GLU271 4.5 18.2 0.5
CB B:GLU271 4.6 19.1 0.5
CG B:GLU271 4.7 19.4 0.5
CG B:GLU271 5.0 19.6 0.5

Chlorine binding site 2 out of 2 in 5eyf

Go back to Chlorine Binding Sites List in 5eyf
Chlorine binding site 2 out of 2 in the Crystal Structure of Solute-Binding Protein From Enterococcus Faecium with Bound Glutamate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Solute-Binding Protein From Enterococcus Faecium with Bound Glutamate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl305

b:62.0
occ:1.00
N B:GLU213 3.3 40.9 0.9
C B:ASN211 3.4 46.5 1.0
CB B:GLU213 3.4 42.2 0.9
CA B:ASN211 3.5 47.0 1.0
CB B:ASN211 3.5 47.0 1.0
N B:PRO212 3.5 47.9 1.0
CG B:GLU213 3.7 47.3 0.9
CD B:PRO212 3.8 49.3 1.0
O B:HOH535 3.8 29.0 0.7
CE2 B:TYR214 3.9 29.3 1.0
CD2 B:TYR214 3.9 28.5 1.0
O B:ASN211 3.9 45.3 1.0
CA B:GLU213 4.0 38.8 0.9
OE1 B:GLU213 4.0 52.3 0.9
CD B:GLU213 4.1 51.4 0.9
OD1 B:ASN211 4.2 48.0 1.0
C B:PRO212 4.3 45.4 1.0
CG B:ASN211 4.4 48.4 1.0
CG B:PRO212 4.4 49.5 1.0
CA B:PRO212 4.5 47.7 1.0
C B:GLU213 4.8 33.9 0.9
NE2 B:GLN190 4.9 24.5 0.7
N B:ASN211 4.9 47.7 1.0
N B:TYR214 4.9 30.6 1.0

Reference:

N.Maltseva, Y.Kim, R.Mulligan, S.Shatsman, W.F.Anderson, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of Solute-Binding Protein From Enterococcus Faecium with Bound Glutamate To Be Published.
Page generated: Sat Dec 12 11:42:19 2020

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