Chlorine in PDB 5f14: Structure of Native Hen Egg-White Lysozyme

All present enzymatic activity of Structure of Native Hen Egg-White Lysozyme:
3.2.1.17;

The structure of Structure of Native Hen Egg-White Lysozyme, PDB code: 5f14 was solved by C.Mcglone, J.C.Nix, R.C.Page, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	55.73 / 1.15
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	78.814, 78.814, 37.292, 90.00, 90.00, 90.00
R / Rfree (%)	16.6 / 18.2

The structure of Structure of Native Hen Egg-White Lysozyme also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Chlorine atom in the Structure of Native Hen Egg-White Lysozyme (pdb code 5f14). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Structure of Native Hen Egg-White Lysozyme, PDB code: 5f14:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Structure of Native Hen Egg-White Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Native Hen Egg-White Lysozyme within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl202 b:12.0 occ:1.00 OH A:TYR23 3.0 10.4 1.0 O A:HOH372 3.2 10.7 1.0 CZ A:TYR23 3.7 9.1 1.0 CE2 A:TYR23 3.7 9.1 1.0 CA A:GLY104 4.1 10.3 1.0 O A:ARG21 4.6 12.3 1.0 N A:GLY104 4.7 9.8 1.0 CE1 A:TYR23 4.9 8.7 1.0 CD2 A:TYR23 4.9 8.8 1.0 O A:HOH407 5.0 50.6 1.0

Chlorine binding site 2 out of 3 in the Structure of Native Hen Egg-White Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Native Hen Egg-White Lysozyme within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl203 b:19.2 occ:1.00 N A:THR69 3.0 13.5 1.0 O A:THR69 3.1 16.3 1.0 O A:HOH471 3.2 36.2 1.0 O A:HOH410 3.3 13.2 1.0 O A:HOH481 3.3 25.4 1.0 O A:HOH389 3.4 44.4 1.0 C A:GLY67 3.4 13.4 1.0 C A:THR69 3.4 14.3 1.0 N A:ARG68 3.5 11.2 1.0 CA A:GLY67 3.6 13.8 1.0 N A:GLY67 3.6 12.8 1.0 CA A:THR69 3.7 12.8 1.0 OG A:SER72 3.7 21.7 1.0 OD1 A:ASN65 3.8 17.2 1.0 O A:GLY67 4.0 15.7 1.0 O A:HOH433 4.0 20.8 1.0 C A:ARG68 4.0 15.6 1.0 CB A:THR69 4.1 11.9 1.0 CA A:ARG68 4.2 13.0 1.0 OD1 A:ASP66 4.3 9.2 1.0 N A:PRO70 4.3 18.4 1.0 NA A:NA201 4.7 30.7 1.0 C A:ASP66 4.7 11.2 1.0 OG1 A:THR69 4.7 11.5 1.0 CA A:PRO70 4.9 18.5 1.0 N A:ASP66 4.9 9.8 1.0 O A:HOH361 4.9 17.6 0.5 O A:HOH438 4.9 51.7 1.0 CG A:ASN65 5.0 20.7 1.0 CB A:SER72 5.0 47.4 1.0

Chlorine binding site 3 out of 3 in the Structure of Native Hen Egg-White Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of Native Hen Egg-White Lysozyme within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl204 b:30.7 occ:1.00 O A:HOH490 2.9 34.9 1.0 N A:ILE88 3.3 13.6 1.0 O A:HOH504 3.4 25.2 1.0 O A:HOH347 3.4 26.0 1.0 CG1 A:ILE88 3.6 12.9 1.0 CE1 A:HIS15 3.7 21.1 1.0 CA A:ASP87 3.7 15.0 1.0 C A:ASP87 4.0 13.8 1.0 O A:SER86 4.1 19.2 1.0 CG A:ASP87 4.2 27.2 1.0 CB A:ALA11 4.2 12.4 1.0 CB A:ILE88 4.2 12.3 1.0 OD1 A:ASP87 4.2 18.6 1.0 CG2 A:ILE88 4.2 13.8 1.0 CA A:ILE88 4.3 11.2 1.0 CZ A:PHE3 4.3 12.3 1.0 OD2 A:ASP87 4.4 31.3 1.0 NE2 A:HIS15 4.4 26.5 1.0 ND1 A:HIS15 4.5 19.2 1.0 CB A:ASP87 4.5 17.8 1.0 CD1 A:ILE88 4.5 13.4 1.0 O A:HOH326 4.6 27.8 1.0 N A:ASP87 4.8 15.0 1.0 C A:SER86 4.8 17.2 1.0 CE2 A:PHE3 4.9 12.6 1.0

M.Lucius, R.Falatach, C.Mcglone, K.Makaroff, A.Danielson, C.Williams, J.C.Nix, D.Konkolewicz, R.C.Page, J.A.Berberich. Investigating the Impact of Polymer Functional Groups on the Stability and Activity of Lysozyme-Polymer Conjugates. Biomacromolecules V. 17 1123 2016.
ISSN: ESSN 1526-4602
PubMed: 26866284
DOI: 10.1021/ACS.BIOMAC.5B01743