Chlorine in PDB 5f15: Crystal Structure of Arnt From Cupriavidus Metallidurans Bound to Undecaprenyl Phosphate

The structure of Crystal Structure of Arnt From Cupriavidus Metallidurans Bound to Undecaprenyl Phosphate, PDB code: 5f15 was solved by V.I.Petrou, O.B.Clarke, D.Tomasek, S.Banerjee, K.R.Rajashankar, F.Mancia, New York Consortium On Membrane Protein Structure (Nycomps), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.89 / 3.20
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	59.648, 80.322, 150.161, 90.00, 90.00, 90.00
R / Rfree (%)	22.2 / 26.3

The binding sites of Chlorine atom in the Crystal Structure of Arnt From Cupriavidus Metallidurans Bound to Undecaprenyl Phosphate (pdb code 5f15). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Arnt From Cupriavidus Metallidurans Bound to Undecaprenyl Phosphate, PDB code: 5f15:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Arnt From Cupriavidus Metallidurans Bound to Undecaprenyl Phosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Arnt From Cupriavidus Metallidurans Bound to Undecaprenyl Phosphate within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl679 b:90.5 occ:1.00 NZ A:LYS302 2.9 46.1 1.0 CE A:LYS302 3.5 46.4 1.0 C10 A:MPG605 3.5 29.7 1.0 CD A:LYS371 3.8 48.1 1.0 CB A:SER368 4.3 46.6 1.0 OG A:SER368 4.3 47.8 1.0 C9 A:MPG605 4.3 30.0 1.0 CE A:LYS371 4.4 49.3 1.0 CA A:SER368 4.5 46.3 1.0 O A:SER368 4.6 44.7 1.0 NE2 A:GLN372 4.9 43.6 1.0 CD A:LYS302 5.0 45.7 1.0 CG A:LYS371 5.0 47.3 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Arnt From Cupriavidus Metallidurans Bound to Undecaprenyl Phosphate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Arnt From Cupriavidus Metallidurans Bound to Undecaprenyl Phosphate within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl680 b:55.4 occ:1.00 ND1 A:HIS454 2.9 37.5 1.0 CD A:ARG49 3.4 35.9 1.0 CG1 A:VAL52 3.5 37.2 1.0 O A:HIS454 3.5 38.8 1.0 C A:HIS454 3.6 38.5 1.0 CB A:HIS454 3.7 37.5 1.0 CG A:HIS454 3.7 37.7 1.0 N A:GLU455 3.7 38.5 1.0 NE A:ARG49 3.8 35.3 1.0 CE1 A:HIS454 3.9 37.9 1.0 CA A:GLU455 4.0 38.9 1.0 CG A:ARG49 4.0 36.3 1.0 O A:HIS50 4.2 36.8 1.0 CA A:HIS454 4.2 38.2 1.0 CB A:ARG49 4.3 37.1 1.0 CG2 A:VAL52 4.4 36.1 1.0 O A:LEU451 4.5 36.4 1.0 CB A:VAL52 4.6 36.9 1.0 CA A:GLY458 4.6 39.5 1.0 CB A:GLU455 4.8 39.0 1.0 OE1 A:GLU455 4.8 38.9 1.0 N A:GLY458 4.9 39.9 1.0 CD2 A:HIS454 4.9 38.3 1.0

V.I.Petrou, C.M.Herrera, K.M.Schultz, O.B.Clarke, J.Vendome, D.Tomasek, S.Banerjee, K.R.Rajashankar, M.Belcher Dufrisne, B.Kloss, E.Kloppmann, B.Rost, C.S.Klug, M.S.Trent, L.Shapiro, F.Mancia. Structures of Aminoarabinose Transferase Arnt Suggest A Molecular Basis For Lipid A Glycosylation. Science V. 351 608 2016.
ISSN: ESSN 1095-9203
PubMed: 26912703
DOI: 10.1126/SCIENCE.AAD1172