Atomistry » Chlorine » PDB 5f03-5f6q » 5f16
Atomistry »
  Chlorine »
    PDB 5f03-5f6q »
      5f16 »

Chlorine in PDB 5f16: Cta-Modified Hen Egg-White Lysozyme

Enzymatic activity of Cta-Modified Hen Egg-White Lysozyme

All present enzymatic activity of Cta-Modified Hen Egg-White Lysozyme:
3.2.1.17;

Protein crystallography data

The structure of Cta-Modified Hen Egg-White Lysozyme, PDB code: 5f16 was solved by C.Mcglone, J.C.Nix, R.C.Page, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.23 / 1.20
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.111, 78.111, 37.610, 90.00, 90.00, 90.00
R / Rfree (%) 20.9 / 24.8

Other elements in 5f16:

The structure of Cta-Modified Hen Egg-White Lysozyme also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Cta-Modified Hen Egg-White Lysozyme (pdb code 5f16). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Cta-Modified Hen Egg-White Lysozyme, PDB code: 5f16:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 5f16

Go back to Chlorine Binding Sites List in 5f16
Chlorine binding site 1 out of 3 in the Cta-Modified Hen Egg-White Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Cta-Modified Hen Egg-White Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:18.2
occ:1.00
OH A:TYR23 3.0 19.0 1.0
O A:HOH421 3.1 34.0 1.0
O A:HOH356 3.2 21.2 1.0
CZ A:TYR23 3.6 17.4 1.0
CE2 A:TYR23 3.7 17.6 1.0
CA A:GLY104 4.1 16.6 1.0
O A:ARG21 4.6 22.3 1.0
N A:GLY104 4.7 17.7 1.0
CE1 A:TYR23 4.8 16.6 1.0
CD2 A:TYR23 4.9 15.8 1.0

Chlorine binding site 2 out of 3 in 5f16

Go back to Chlorine Binding Sites List in 5f16
Chlorine binding site 2 out of 3 in the Cta-Modified Hen Egg-White Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Cta-Modified Hen Egg-White Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:23.4
occ:1.00
O A:HOH426 2.9 45.7 1.0
O A:HOH361 3.1 17.6 1.0
N A:THR69 3.2 18.5 1.0
O A:HOH400 3.3 32.8 1.0
O A:THR69 3.3 22.8 1.0
O A:HOH324 3.3 42.6 1.0
C A:THR69 3.5 19.3 1.0
N A:ARG68 3.6 18.0 1.0
C A:GLY67 3.6 20.9 1.0
CA A:GLY67 3.6 19.6 1.0
OD1 A:ASN65 3.6 21.2 1.0
N A:GLY67 3.7 16.5 1.0
OG A:SER72 3.8 20.0 1.0
CA A:THR69 3.8 19.3 1.0
O A:HOH379 4.1 19.9 1.0
O A:GLY67 4.2 23.4 1.0
CB A:THR69 4.2 16.3 1.0
C A:ARG68 4.2 20.7 1.0
N A:PRO70 4.3 23.9 1.0
OD1 A:ASP66 4.3 15.9 1.0
CA A:ARG68 4.4 21.0 1.0
CA A:PRO70 4.7 23.8 1.0
NA A:NA201 4.7 16.5 1.0
C A:ASP66 4.8 17.5 1.0
CG A:ASN65 4.8 17.4 1.0
OG1 A:THR69 4.9 16.5 1.0
N A:ASP66 4.9 13.6 1.0

Chlorine binding site 3 out of 3 in 5f16

Go back to Chlorine Binding Sites List in 5f16
Chlorine binding site 3 out of 3 in the Cta-Modified Hen Egg-White Lysozyme


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Cta-Modified Hen Egg-White Lysozyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:26.7
occ:1.00
O A:HOH310 3.1 53.0 1.0
N A:ILE88 3.3 16.8 1.0
O A:HOH325 3.3 28.3 1.0
CG1 A:ILE88 3.7 20.2 1.0
O A:HOH377 3.7 47.6 1.0
CA A:ASP87 3.8 17.7 1.0
O A:SER86 4.0 23.5 1.0
C A:ASP87 4.1 16.2 1.0
CE1 A:HIS15 4.1 29.4 1.0
CZ A:PHE3 4.2 20.9 1.0
OD1 A:ASP87 4.2 26.2 1.0
CB A:ALA11 4.2 22.1 1.0
CG2 A:ILE88 4.3 24.3 1.0
NH1 A:ARG14 4.3 38.9 1.0
CG A:ASP87 4.3 48.3 1.0
CB A:ILE88 4.3 18.1 1.0
CA A:ILE88 4.3 16.9 1.0
CB A:ASP87 4.6 21.0 1.0
CD1 A:ILE88 4.6 19.4 1.0
CE2 A:PHE3 4.6 19.9 1.0
OD2 A:ASP87 4.7 38.0 1.0
N A:ASP87 4.8 16.6 1.0
ND1 A:HIS15 4.8 27.4 1.0
C A:SER86 4.8 18.6 1.0

Reference:

M.Lucius, R.Falatach, C.Mcglone, K.Makaroff, A.Danielson, C.Williams, J.C.Nix, D.Konkolewicz, R.C.Page, J.A.Berberich. Investigating the Impact of Polymer Functional Groups on the Stability and Activity of Lysozyme-Polymer Conjugates. Biomacromolecules V. 17 1123 2016.
ISSN: ESSN 1526-4602
PubMed: 26866284
DOI: 10.1021/ACS.BIOMAC.5B01743
Page generated: Fri Jul 26 07:35:31 2024

Last articles

Ca in 5MER
Ca in 5MAY
Ca in 5MEH
Ca in 5MC9
Ca in 5MA7
Ca in 5M86
Ca in 5M9W
Ca in 5M8G
Ca in 5M99
Ca in 5M8D
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy