Chlorine in PDB 5f1q: Crystal Structure of Periplasmic Dipeptide Transport Protein From Yersinia Pestis

The structure of Crystal Structure of Periplasmic Dipeptide Transport Protein From Yersinia Pestis, PDB code: 5f1q was solved by Y.Kim, M.Zhou, S.Shatsman, W.F.Anderson, A.Joachimiak, Center Forstructural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	28.31 / 1.96
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	289.290, 59.745, 80.631, 90.00, 103.96, 90.00
R / Rfree (%)	16.6 / 20

The binding sites of Chlorine atom in the Crystal Structure of Periplasmic Dipeptide Transport Protein From Yersinia Pestis (pdb code 5f1q). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Periplasmic Dipeptide Transport Protein From Yersinia Pestis, PDB code: 5f1q:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Periplasmic Dipeptide Transport Protein From Yersinia Pestis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Periplasmic Dipeptide Transport Protein From Yersinia Pestis within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl606 b:20.0 occ:1.00 OH A:TYR345 2.9 15.2 1.0 N A:LYS335 3.1 19.2 1.0 O A:HOH769 3.2 36.3 1.0 NE2 A:HIS505 3.2 13.0 1.0 N A:ASN336 3.3 15.3 1.0 CD2 A:HIS505 3.4 14.9 1.0 CE1 A:TYR345 3.5 20.2 1.0 CZ A:TYR345 3.7 17.8 1.0 CA A:ALA334 3.7 19.7 1.0 O A:ASN336 3.9 13.9 1.0 CG A:LYS335 3.9 19.5 1.0 C A:ALA334 3.9 19.4 1.0 CB A:ASN336 4.1 12.6 1.0 CA A:LYS335 4.1 22.2 1.0 CA A:ASN336 4.1 14.3 1.0 CB A:ALA334 4.1 16.0 1.0 C A:LYS335 4.2 21.3 1.0 O A:ILE338 4.3 15.1 1.0 C A:ASN336 4.4 17.2 1.0 CB A:LYS335 4.5 21.9 1.0 CE1 A:HIS505 4.5 15.9 1.0 O A:ALA333 4.5 20.8 1.0 ND2 A:ASN336 4.6 17.7 1.0 CG A:ASN336 4.7 16.1 1.0 CG A:HIS505 4.7 17.1 1.0 CD A:PRO340 4.8 14.0 1.0 CD1 A:TYR345 4.8 17.5 1.0 N A:ALA334 4.9 21.9 1.0 CG A:PRO340 5.0 15.6 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Periplasmic Dipeptide Transport Protein From Yersinia Pestis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Periplasmic Dipeptide Transport Protein From Yersinia Pestis within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl603 b:21.3 occ:1.00 OH B:TYR345 3.0 21.6 1.0 N B:LYS335 3.1 19.1 1.0 NE2 B:HIS505 3.2 17.2 1.0 N B:ASN336 3.3 17.5 1.0 CD2 B:HIS505 3.4 15.2 1.0 O B:HOH797 3.5 31.7 1.0 CE1 B:TYR345 3.5 23.4 1.0 CA B:ALA334 3.7 18.4 1.0 CZ B:TYR345 3.7 22.0 1.0 CG B:LYS335 3.8 20.8 1.0 C B:ALA334 3.9 24.3 1.0 O B:ASN336 4.0 18.6 1.0 CB B:ALA334 4.0 16.8 1.0 CB B:ASN336 4.0 18.3 1.0 CA B:LYS335 4.1 18.6 1.0 CA B:ASN336 4.1 18.1 1.0 C B:LYS335 4.2 23.5 1.0 O B:ILE338 4.4 22.6 1.0 C B:ASN336 4.5 22.1 1.0 CB B:LYS335 4.5 19.1 1.0 CE1 B:HIS505 4.5 15.3 1.0 CD B:PRO340 4.6 20.8 1.0 O B:ALA333 4.6 21.8 1.0 ND2 B:ASN336 4.6 24.2 1.0 CG B:ASN336 4.7 22.7 1.0 CG B:HIS505 4.7 15.4 1.0 CD1 B:TYR345 4.8 24.9 1.0 N B:ALA334 4.9 20.0 1.0 CD B:LYS335 5.0 24.5 1.0 CE B:LYS335 5.0 26.2 1.0

Y.Kim, M.Zhou, S.Shatsman, W.F.Anderson, A.Joachimiak. Crystal Structure of Periplasmic Dipeptide Transport Protein From Yersinia Pestis To Be Published.