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Chlorine in PDB 5f4s: Tagatose-1,6-Bisphosphate Aldolase From Streptococcus Pyogenes in Complex with Fbp

Enzymatic activity of Tagatose-1,6-Bisphosphate Aldolase From Streptococcus Pyogenes in Complex with Fbp

All present enzymatic activity of Tagatose-1,6-Bisphosphate Aldolase From Streptococcus Pyogenes in Complex with Fbp:
4.1.2.40;

Protein crystallography data

The structure of Tagatose-1,6-Bisphosphate Aldolase From Streptococcus Pyogenes in Complex with Fbp, PDB code: 5f4s was solved by C.Lowkam, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.10 / 1.72
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 64.011, 109.141, 238.335, 90.00, 90.00, 90.00
R / Rfree (%) 18 / 21.9

Other elements in 5f4s:

The structure of Tagatose-1,6-Bisphosphate Aldolase From Streptococcus Pyogenes in Complex with Fbp also contains other interesting chemical elements:

Calcium (Ca) 5 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Tagatose-1,6-Bisphosphate Aldolase From Streptococcus Pyogenes in Complex with Fbp (pdb code 5f4s). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Tagatose-1,6-Bisphosphate Aldolase From Streptococcus Pyogenes in Complex with Fbp, PDB code: 5f4s:

Chlorine binding site 1 out of 1 in 5f4s

Go back to Chlorine Binding Sites List in 5f4s
Chlorine binding site 1 out of 1 in the Tagatose-1,6-Bisphosphate Aldolase From Streptococcus Pyogenes in Complex with Fbp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Tagatose-1,6-Bisphosphate Aldolase From Streptococcus Pyogenes in Complex with Fbp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl3003

b:71.6
occ:0.30
 O5P A:P6F3001 0.8 41.5 0.5
O6P A:P6F3001 0.9 34.3 0.1
O6P A:P6F3001 1.0 34.3 0.1
P2 A:P6F3001 1.9 42.8 0.1
P2 A:P6F3001 1.9 42.8 0.1
H A:ARG29 1.9 33.1 1.0
P2 A:P6F3001 2.0 42.5 0.5
HG1 A:THR94 2.2 37.4 1.0
H A:GLY30 2.2 42.9 1.0
H A:ALA31 2.2 48.1 1.0
O5P A:P6F3001 2.3 36.9 0.1
O5P A:P6F3001 2.3 36.9 0.1
O4P A:P6F3001 2.6 37.9 0.5
OG1 A:THR94 2.6 31.1 1.0
N A:GLY30 2.7 35.8 1.0
N A:ARG29 2.7 27.6 1.0
O4P A:P6F3001 2.8 41.7 0.1
O4P A:P6F3001 2.8 41.7 0.1
O6 A:P6F3001 2.9 58.0 0.1
N A:ALA31 3.1 40.1 1.0
O6P A:P6F3001 3.1 42.0 0.5
O6 A:P6F3001 3.1 58.0 0.1
HB2 A:ARG29 3.2 34.9 1.0
HA A:GLN28 3.2 28.9 1.0
O6 A:P6F3001 3.2 46.8 0.5
C A:ARG29 3.3 37.1 1.0
CA A:ARG29 3.4 31.1 1.0
HA3 A:GLY30 3.4 47.9 1.0
CA A:GLY30 3.5 40.0 1.0
HB3 A:ALA31 3.6 49.5 1.0
C A:GLY30 3.8 37.3 1.0
CB A:ARG29 3.8 29.1 1.0
C A:GLN28 3.8 28.7 1.0
O A:HOH3310 3.8 47.6 1.0
HB2 A:ALA31 3.8 49.5 1.0
CB A:THR94 3.9 32.0 1.0
CA A:GLN28 3.9 24.1 1.0
HB A:THR94 3.9 38.4 1.0
CB A:ALA31 4.0 41.3 1.0
H A:LEU32 4.1 41.0 1.0
CA A:ALA31 4.1 39.5 1.0
O A:HOH3236 4.2 21.6 0.6
HB3 A:GLN28 4.3 34.2 1.0
HB3 A:ARG29 4.3 34.9 1.0
C6 A:P6F3001 4.3 55.3 0.1
HA A:ARG29 4.3 37.3 1.0
HG3 A:GLN28 4.3 34.8 1.0
O A:ARG29 4.4 39.7 1.0
HA2 A:GLY30 4.4 47.9 1.0
HE A:ARG29 4.4 35.8 1.0
C6 A:P6F3001 4.4 55.3 0.1
C6 A:P6F3001 4.5 47.0 0.5
H A:GLY95 4.5 41.1 1.0
HA A:THR94 4.5 35.8 1.0
CB A:GLN28 4.6 28.5 1.0
HG21 A:THR94 4.6 38.2 1.0
O A:HOH3147 4.8 31.6 1.0
CA A:THR94 4.8 29.8 1.0
N A:LEU32 4.8 34.2 1.0
HA A:ALA31 4.8 47.4 1.0
O A:ASP27 4.8 28.3 1.0
CG2 A:THR94 4.8 31.8 1.0
HG3 A:ARG29 4.9 36.0 1.0
HH12 A:ARG34 4.9 58.6 1.0
O A:GLN28 4.9 23.6 1.0
CG A:ARG29 4.9 30.0 1.0
NE A:ARG29 4.9 29.8 1.0
O A:HOH3108 4.9 53.0 1.0
O A:HOH3115 5.0 32.8 1.0
O A:GLY30 5.0 42.2 1.0
HB1 A:ALA31 5.0 49.5 1.0
N A:GLY95 5.0 34.3 1.0
CG A:GLN28 5.0 29.0 1.0

Reference:

C.Lowkam, B.Liotard, J.Sygusch. Non-Stereospecific Substrate Cleavage By Tagatose-Bisphosphate Class I Aldolase To Be Published.
Page generated: Fri Jul 26 07:39:27 2024

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