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Chlorine in PDB 5f62: Crystal Structure of the First Bromodomain of Human BRD4 in Complex with MA4-022-2

Protein crystallography data

The structure of Crystal Structure of the First Bromodomain of Human BRD4 in Complex with MA4-022-2, PDB code: 5f62 was solved by S.W.Ember, J.-Y.Zhu, E.Schonbrunn, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.26 / 1.35
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 37.830, 44.210, 78.520, 90.00, 90.00, 90.00
R / Rfree (%) 13.9 / 18.3

Other elements in 5f62:

The structure of Crystal Structure of the First Bromodomain of Human BRD4 in Complex with MA4-022-2 also contains other interesting chemical elements:

Fluorine (F) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the First Bromodomain of Human BRD4 in Complex with MA4-022-2 (pdb code 5f62). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of the First Bromodomain of Human BRD4 in Complex with MA4-022-2, PDB code: 5f62:

Chlorine binding site 1 out of 1 in 5f62

Go back to Chlorine Binding Sites List in 5f62
Chlorine binding site 1 out of 1 in the Crystal Structure of the First Bromodomain of Human BRD4 in Complex with MA4-022-2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the First Bromodomain of Human BRD4 in Complex with MA4-022-2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:14.2
occ:1.00
CL1 A:5W1201 0.0 14.2 1.0
C26 A:5W1201 1.7 11.2 1.0
C25 A:5W1201 2.7 10.7 1.0
H291 A:5W1201 2.7 14.9 1.0
C28 A:5W1201 2.7 11.5 1.0
H251 A:5W1201 2.8 12.8 1.0
N29 A:5W1201 3.0 12.4 1.0
HZ3 A:TRP81 3.0 16.6 1.0
HD23 A:LEU92 3.2 19.1 1.0
H341 A:5W1201 3.3 15.9 1.0
HH2 A:TRP81 3.4 17.1 1.0
HD21 A:LEU92 3.6 19.1 1.0
CZ3 A:TRP81 3.8 13.9 1.0
H323 A:5W1201 3.8 15.1 1.0
CD2 A:LEU92 3.8 15.9 1.0
C37 A:5W1201 4.0 9.8 1.0
CH2 A:TRP81 4.0 14.3 1.0
C24 A:5W1201 4.0 9.8 1.0
C34 A:5W1201 4.2 13.2 1.0
HD22 A:LEU92 4.3 19.1 1.0
S30 A:5W1201 4.5 13.3 1.0
C23 A:5W1201 4.5 9.0 1.0
HD12 A:LEU92 4.6 19.3 1.0
C32 A:5W1201 4.7 12.6 1.0
H343 A:5W1201 4.7 15.9 1.0
H22 A:EDO207 4.7 44.5 1.0
C31 A:5W1201 4.7 13.3 1.0
H342 A:5W1201 4.7 15.9 1.0
H11 A:EDO207 4.7 48.0 1.0
H371 A:5W1201 4.7 11.7 1.0
H241 A:5W1201 4.7 11.8 1.0
H21 A:EDO207 4.7 44.5 1.0
F10 A:5W1201 4.8 21.3 1.0
HD11 A:LEU92 4.9 19.3 1.0
CE3 A:TRP81 5.0 12.9 1.0

Reference:

S.W.Ember, Q.T.Lambert, N.Berndt, S.Gunawan, M.Ayaz, M.Tauro, J.Y.Zhu, P.J.Cranfill, P.Greninger, C.C.Lynch, C.H.Benes, H.R.Lawrence, G.W.Reuther, N.J.Lawrence, E.Schonbrunn. Potent Dual Bet Bromodomain-Kinase Inhibitors As Value-Added Multitargeted Chemical Probes and Cancer Therapeutics. Mol. Cancer Ther. V. 16 1054 2017.
ISSN: ESSN 1538-8514
PubMed: 28336808
DOI: 10.1158/1535-7163.MCT-16-0568-T
Page generated: Sat Jul 12 01:56:41 2025

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