Atomistry » Chlorine » PDB 5f6q-5fdf » 5f81
Atomistry »
  Chlorine »
    PDB 5f6q-5fdf »
      5f81 »

Chlorine in PDB 5f81: Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography

Enzymatic activity of Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography

All present enzymatic activity of Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography:
3.2.1.17;

Protein crystallography data

The structure of Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography, PDB code: 5f81 was solved by C.G.Roessler, R.Agarwal, M.Allaire, R.Alonso-Mori, B.Andi, J.F.R.Bachega, M.Bommer, A.S.Brewster, M.C.Browne, R.Chatterjee, E.Cho, A.E.Cohen, M.Cowan, S.Datwani, V.L.Davidson, J.Defever, B.Eaton, R.Ellson, Y.Feng, L.P.Ghislain, J.M.Glownia, G.Han, J.Hattne, J.Hellmich, A.Heroux, M.Ibrahim, J.Kern, A.Kuczewski, H.T.Lemke, P.Liu, L.Majlof, W.M.Mcclintock, S.Myers, S.Nelsen, J.Olechno, A.M.Orville, N.K.Sauter, A.S.Soares, M.S.Soltis, H.Song, R.G.Stearns, R.Tran, Y.Tsai, M.Uervirojnangkoorn, C.M.Wilmot, V.Yachandra, J.Yano, E.T.Yukl, D.Zhu, A.Zouni, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.51 / 2.13
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.504, 78.504, 37.618, 90.00, 90.00, 90.00
R / Rfree (%) 24.2 / 33.3

Other elements in 5f81:

The structure of Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography (pdb code 5f81). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography, PDB code: 5f81:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 5f81

Go back to Chlorine Binding Sites List in 5f81
Chlorine binding site 1 out of 5 in the Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:41.5
occ:1.00
 OH A:TYR23 2.9 10.6 1.0
CZ A:TYR23 3.5 10.3 1.0
CE2 A:TYR23 3.5 10.3 1.0
CA A:GLY104 4.5 16.2 1.0
O A:ARG21 4.6 13.9 1.0
CE1 A:TYR23 4.6 10.6 1.0
CD2 A:TYR23 4.7 10.6 1.0

Chlorine binding site 2 out of 5 in 5f81

Go back to Chlorine Binding Sites List in 5f81
Chlorine binding site 2 out of 5 in the Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:29.8
occ:1.00
 N A:GLY26 2.7 11.5 1.0
OG A:SER24 2.7 10.5 1.0
CA A:GLY26 3.2 11.8 1.0
O A:HOH350 3.5 17.6 1.0
N A:LEU25 3.5 10.6 1.0
CB A:SER24 3.7 10.5 1.0
C A:LEU25 3.8 11.0 1.0
CA A:GLN121 3.9 18.1 1.0
CG2 A:VAL120 3.9 16.2 1.0
C A:SER24 4.0 10.5 1.0
CA A:LEU25 4.1 10.4 1.0
N A:GLN121 4.1 17.1 1.0
O A:VAL120 4.2 15.7 1.0
C A:GLY26 4.2 12.1 1.0
CD1 A:ILE124 4.2 17.5 1.0
CG A:GLN121 4.2 23.3 1.0
O A:HOH428 4.3 34.1 1.0
N A:ASN27 4.3 12.1 1.0
C A:VAL120 4.3 16.1 1.0
CB A:LEU25 4.4 10.1 1.0
CG1 A:ILE124 4.4 16.4 1.0
CA A:SER24 4.5 10.8 1.0
O A:SER24 4.6 10.7 1.0
CB A:GLN121 4.6 20.3 1.0
O A:LEU25 4.9 11.8 1.0
CB A:VAL120 4.9 16.3 1.0
C A:GLN121 5.0 17.4 1.0

Chlorine binding site 3 out of 5 in 5f81

Go back to Chlorine Binding Sites List in 5f81
Chlorine binding site 3 out of 5 in the Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:32.9
occ:1.00
 O A:SER36 2.4 10.6 1.0
O A:HOH376 3.0 29.8 1.0
CB A:ASN39 3.2 11.5 1.0
C A:SER36 3.3 10.8 1.0
ND2 A:ASN39 3.5 12.5 1.0
CB A:ALA42 3.7 15.8 1.0
CG A:ASN39 3.9 11.8 1.0
CB A:ASN37 3.9 11.9 1.0
CA A:SER36 4.1 10.6 1.0
N A:ASN37 4.2 11.2 1.0
CA A:ALA42 4.4 15.2 1.0
CA A:ASN39 4.5 11.3 1.0
CA A:ASN37 4.5 11.2 1.0
CB A:SER36 4.7 10.6 1.0
N A:ASN39 4.7 10.7 1.0
N A:ALA42 4.8 13.9 1.0
O A:ASN39 4.8 11.5 1.0
C A:ASN37 4.9 10.9 1.0

Chlorine binding site 4 out of 5 in 5f81

Go back to Chlorine Binding Sites List in 5f81
Chlorine binding site 4 out of 5 in the Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:25.9
occ:1.00
 ND2 A:ASN59 2.4 19.1 1.0
O A:HOH370 2.9 27.2 1.0
ND2 A:ASN46 3.2 22.4 1.0
CG A:ASN59 3.6 17.0 1.0
OD1 A:ASP52 3.6 12.6 1.0
CG A:ASN46 3.6 23.5 1.0
OD1 A:ASN46 3.6 25.9 1.0
OD2 A:ASP52 3.7 13.6 1.0
O A:HOH318 3.9 19.8 1.0
CG A:ASP52 4.1 12.2 1.0
OD1 A:ASN59 4.2 16.1 1.0
CB A:ASN59 4.5 16.7 1.0
OG A:SER50 4.6 13.4 1.0
CB A:ASN46 4.6 23.3 1.0
O A:HOH400 4.8 30.6 1.0
O A:HOH361 4.9 16.9 1.0

Chlorine binding site 5 out of 5 in 5f81

Go back to Chlorine Binding Sites List in 5f81
Chlorine binding site 5 out of 5 in the Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:30.4
occ:1.00
 O A:LEU83 2.4 14.1 1.0
OG A:SER91 2.8 20.9 1.0
N A:ILE55 3.1 13.4 1.0
CB A:ILE55 3.5 15.7 1.0
C A:LEU83 3.5 14.2 1.0
CG2 A:ILE55 3.6 16.1 1.0
O A:THR40 3.6 11.6 1.0
CB A:SER91 3.7 20.1 1.0
CG2 A:THR40 3.7 12.1 1.0
CA A:THR40 3.8 12.0 1.0
CA A:GLY54 3.8 12.1 1.0
CA A:ILE55 3.9 14.7 1.0
O A:SER85 3.9 17.2 1.0
CB A:THR40 3.9 12.1 1.0
C A:GLY54 4.0 12.8 1.0
C A:THR40 4.2 12.0 1.0
O A:HOH347 4.2 17.4 1.0
CA A:LEU84 4.4 15.6 1.0
N A:LEU84 4.4 14.8 1.0
CA A:LEU83 4.4 14.4 1.0
C A:LEU84 4.6 16.7 1.0
CG2 A:ILE88 4.8 21.2 1.0
CG1 A:ILE55 4.8 16.7 1.0
CB A:LEU83 4.9 14.7 1.0
N A:SER85 4.9 17.5 1.0
N A:THR40 4.9 11.4 1.0
O A:LEU84 5.0 17.4 1.0

Reference:

C.G.Roessler, R.Agarwal, M.Allaire, R.Alonso-Mori, B.Andi, J.F.Bachega, M.Bommer, A.S.Brewster, M.C.Browne, R.Chatterjee, E.Cho, A.E.Cohen, M.Cowan, S.Datwani, V.L.Davidson, J.Defever, B.Eaton, R.Ellson, Y.Feng, L.P.Ghislain, J.M.Glownia, G.Han, J.Hattne, J.Hellmich, A.Heroux, M.Ibrahim, J.Kern, A.Kuczewski, H.T.Lemke, P.Liu, L.Majlof, W.M.Mcclintock, S.Myers, S.Nelsen, J.Olechno, A.M.Orville, N.K.Sauter, A.S.Soares, S.M.Soltis, H.Song, R.G.Stearns, R.Tran, Y.Tsai, M.Uervirojnangkoorn, C.M.Wilmot, V.Yachandra, J.Yano, E.T.Yukl, D.Zhu, A.Zouni. Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography. Structure V. 24 631 2016.
ISSN: ISSN 0969-2126
PubMed: 26996959
DOI: 10.1016/J.STR.2016.02.007
Page generated: Fri Jul 26 07:41:59 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy