Atomistry » Chlorine » PDB 5f6x-5fdg » 5f81
Atomistry »
  Chlorine »
    PDB 5f6x-5fdg »
      5f81 »

Chlorine in PDB 5f81: Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography

Enzymatic activity of Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography

All present enzymatic activity of Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography:
3.2.1.17;

Protein crystallography data

The structure of Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography, PDB code: 5f81 was solved by C.G.Roessler, R.Agarwal, M.Allaire, R.Alonso-Mori, B.Andi, J.F.R.Bachega, M.Bommer, A.S.Brewster, M.C.Browne, R.Chatterjee, E.Cho, A.E.Cohen, M.Cowan, S.Datwani, V.L.Davidson, J.Defever, B.Eaton, R.Ellson, Y.Feng, L.P.Ghislain, J.M.Glownia, G.Han, J.Hattne, J.Hellmich, A.Heroux, M.Ibrahim, J.Kern, A.Kuczewski, H.T.Lemke, P.Liu, L.Majlof, W.M.Mcclintock, S.Myers, S.Nelsen, J.Olechno, A.M.Orville, N.K.Sauter, A.S.Soares, M.S.Soltis, H.Song, R.G.Stearns, R.Tran, Y.Tsai, M.Uervirojnangkoorn, C.M.Wilmot, V.Yachandra, J.Yano, E.T.Yukl, D.Zhu, A.Zouni, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.51 / 2.13
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.504, 78.504, 37.618, 90.00, 90.00, 90.00
R / Rfree (%) 24.2 / 33.3

Other elements in 5f81:

The structure of Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography (pdb code 5f81). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography, PDB code: 5f81:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 5f81

Go back to Chlorine Binding Sites List in 5f81
Chlorine binding site 1 out of 5 in the Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:41.5
occ:1.00
 OH A:TYR23 2.9 10.6 1.0
CZ A:TYR23 3.5 10.3 1.0
CE2 A:TYR23 3.5 10.3 1.0
CA A:GLY104 4.5 16.2 1.0
O A:ARG21 4.6 13.9 1.0
CE1 A:TYR23 4.6 10.6 1.0
CD2 A:TYR23 4.7 10.6 1.0

Chlorine binding site 2 out of 5 in 5f81

Go back to Chlorine Binding Sites List in 5f81
Chlorine binding site 2 out of 5 in the Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl203

b:29.8
occ:1.00
 N A:GLY26 2.7 11.5 1.0
OG A:SER24 2.7 10.5 1.0
CA A:GLY26 3.2 11.8 1.0
O A:HOH350 3.5 17.6 1.0
N A:LEU25 3.5 10.6 1.0
CB A:SER24 3.7 10.5 1.0
C A:LEU25 3.8 11.0 1.0
CA A:GLN121 3.9 18.1 1.0
CG2 A:VAL120 3.9 16.2 1.0
C A:SER24 4.0 10.5 1.0
CA A:LEU25 4.1 10.4 1.0
N A:GLN121 4.1 17.1 1.0
O A:VAL120 4.2 15.7 1.0
C A:GLY26 4.2 12.1 1.0
CD1 A:ILE124 4.2 17.5 1.0
CG A:GLN121 4.2 23.3 1.0
O A:HOH428 4.3 34.1 1.0
N A:ASN27 4.3 12.1 1.0
C A:VAL120 4.3 16.1 1.0
CB A:LEU25 4.4 10.1 1.0
CG1 A:ILE124 4.4 16.4 1.0
CA A:SER24 4.5 10.8 1.0
O A:SER24 4.6 10.7 1.0
CB A:GLN121 4.6 20.3 1.0
O A:LEU25 4.9 11.8 1.0
CB A:VAL120 4.9 16.3 1.0
C A:GLN121 5.0 17.4 1.0

Chlorine binding site 3 out of 5 in 5f81

Go back to Chlorine Binding Sites List in 5f81
Chlorine binding site 3 out of 5 in the Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:32.9
occ:1.00
 O A:SER36 2.4 10.6 1.0
O A:HOH376 3.0 29.8 1.0
CB A:ASN39 3.2 11.5 1.0
C A:SER36 3.3 10.8 1.0
ND2 A:ASN39 3.5 12.5 1.0
CB A:ALA42 3.7 15.8 1.0
CG A:ASN39 3.9 11.8 1.0
CB A:ASN37 3.9 11.9 1.0
CA A:SER36 4.1 10.6 1.0
N A:ASN37 4.2 11.2 1.0
CA A:ALA42 4.4 15.2 1.0
CA A:ASN39 4.5 11.3 1.0
CA A:ASN37 4.5 11.2 1.0
CB A:SER36 4.7 10.6 1.0
N A:ASN39 4.7 10.7 1.0
N A:ALA42 4.8 13.9 1.0
O A:ASN39 4.8 11.5 1.0
C A:ASN37 4.9 10.9 1.0

Chlorine binding site 4 out of 5 in 5f81

Go back to Chlorine Binding Sites List in 5f81
Chlorine binding site 4 out of 5 in the Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:25.9
occ:1.00
 ND2 A:ASN59 2.4 19.1 1.0
O A:HOH370 2.9 27.2 1.0
ND2 A:ASN46 3.2 22.4 1.0
CG A:ASN59 3.6 17.0 1.0
OD1 A:ASP52 3.6 12.6 1.0
CG A:ASN46 3.6 23.5 1.0
OD1 A:ASN46 3.6 25.9 1.0
OD2 A:ASP52 3.7 13.6 1.0
O A:HOH318 3.9 19.8 1.0
CG A:ASP52 4.1 12.2 1.0
OD1 A:ASN59 4.2 16.1 1.0
CB A:ASN59 4.5 16.7 1.0
OG A:SER50 4.6 13.4 1.0
CB A:ASN46 4.6 23.3 1.0
O A:HOH400 4.8 30.6 1.0
O A:HOH361 4.9 16.9 1.0

Chlorine binding site 5 out of 5 in 5f81

Go back to Chlorine Binding Sites List in 5f81
Chlorine binding site 5 out of 5 in the Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:30.4
occ:1.00
 O A:LEU83 2.4 14.1 1.0
OG A:SER91 2.8 20.9 1.0
N A:ILE55 3.1 13.4 1.0
CB A:ILE55 3.5 15.7 1.0
C A:LEU83 3.5 14.2 1.0
CG2 A:ILE55 3.6 16.1 1.0
O A:THR40 3.6 11.6 1.0
CB A:SER91 3.7 20.1 1.0
CG2 A:THR40 3.7 12.1 1.0
CA A:THR40 3.8 12.0 1.0
CA A:GLY54 3.8 12.1 1.0
CA A:ILE55 3.9 14.7 1.0
O A:SER85 3.9 17.2 1.0
CB A:THR40 3.9 12.1 1.0
C A:GLY54 4.0 12.8 1.0
C A:THR40 4.2 12.0 1.0
O A:HOH347 4.2 17.4 1.0
CA A:LEU84 4.4 15.6 1.0
N A:LEU84 4.4 14.8 1.0
CA A:LEU83 4.4 14.4 1.0
C A:LEU84 4.6 16.7 1.0
CG2 A:ILE88 4.8 21.2 1.0
CG1 A:ILE55 4.8 16.7 1.0
CB A:LEU83 4.9 14.7 1.0
N A:SER85 4.9 17.5 1.0
N A:THR40 4.9 11.4 1.0
O A:LEU84 5.0 17.4 1.0

Reference:

C.G.Roessler, R.Agarwal, M.Allaire, R.Alonso-Mori, B.Andi, J.F.Bachega, M.Bommer, A.S.Brewster, M.C.Browne, R.Chatterjee, E.Cho, A.E.Cohen, M.Cowan, S.Datwani, V.L.Davidson, J.Defever, B.Eaton, R.Ellson, Y.Feng, L.P.Ghislain, J.M.Glownia, G.Han, J.Hattne, J.Hellmich, A.Heroux, M.Ibrahim, J.Kern, A.Kuczewski, H.T.Lemke, P.Liu, L.Majlof, W.M.Mcclintock, S.Myers, S.Nelsen, J.Olechno, A.M.Orville, N.K.Sauter, A.S.Soares, S.M.Soltis, H.Song, R.G.Stearns, R.Tran, Y.Tsai, M.Uervirojnangkoorn, C.M.Wilmot, V.Yachandra, J.Yano, E.T.Yukl, D.Zhu, A.Zouni. Acoustic Injectors For Drop-on-Demand Serial Femtosecond Crystallography. Structure V. 24 631 2016.
ISSN: ISSN 0969-2126
PubMed: 26996959
DOI: 10.1016/J.STR.2016.02.007
Page generated: Fri Jul 26 07:41:59 2024

Last articles

Cl in 2VR1
Cl in 2VQB
Cl in 2VPY
Cl in 2VQ7
Cl in 2VQ9
Cl in 2VQ5
Cl in 2VQ8
Cl in 2VQ2
Cl in 2VPM
Cl in 2VPS
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy