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Chlorine in PDB 5f9z: Crystal Structure of Prolyl-Trna Synthetase From Cryptosporidium Parvum Complexed with Halofuginone and Amppnp

Protein crystallography data

The structure of Crystal Structure of Prolyl-Trna Synthetase From Cryptosporidium Parvum Complexed with Halofuginone and Amppnp, PDB code: 5f9z was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 46.61 / 2.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 89.400, 108.720, 126.350, 90.00, 90.00, 90.00
R / Rfree (%) 20.8 / 23.4

Other elements in 5f9z:

The structure of Crystal Structure of Prolyl-Trna Synthetase From Cryptosporidium Parvum Complexed with Halofuginone and Amppnp also contains other interesting chemical elements:

Bromine (Br) 2 atoms
Zinc (Zn) 2 atoms
Magnesium (Mg) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Prolyl-Trna Synthetase From Cryptosporidium Parvum Complexed with Halofuginone and Amppnp (pdb code 5f9z). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Prolyl-Trna Synthetase From Cryptosporidium Parvum Complexed with Halofuginone and Amppnp, PDB code: 5f9z:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5f9z

Go back to Chlorine Binding Sites List in 5f9z
Chlorine binding site 1 out of 2 in the Crystal Structure of Prolyl-Trna Synthetase From Cryptosporidium Parvum Complexed with Halofuginone and Amppnp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Prolyl-Trna Synthetase From Cryptosporidium Parvum Complexed with Halofuginone and Amppnp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl702

b:43.5
occ:1.00
CL1 A:HFG702 0.0 43.5 1.0
C6 A:HFG702 1.8 42.8 1.0
C5 A:HFG702 2.7 39.9 1.0
C7 A:HFG702 2.8 46.0 1.0
BR1 A:HFG702 3.3 55.6 1.0
CG A:PRO299 3.6 31.5 1.0
O A:HOH1005 3.7 39.9 1.0
CD1 A:LEU266 3.8 45.4 1.0
O A:HOH1018 4.0 36.6 1.0
C10 A:HFG702 4.1 38.3 1.0
C8 A:HFG702 4.1 41.2 1.0
CA A:GLY275 4.1 89.5 1.0
CG A:LEU266 4.4 48.6 1.0
CB A:PRO299 4.4 31.2 1.0
CD2 A:LEU266 4.5 46.9 1.0
C9 A:HFG702 4.6 38.2 1.0
CG2 A:VAL280 4.7 33.0 1.0
CD A:PRO299 4.8 31.8 1.0
CG2 A:THR300 4.9 26.1 1.0
N A:PHE276 4.9 93.9 1.0
C A:GLY275 4.9 91.9 1.0

Chlorine binding site 2 out of 2 in 5f9z

Go back to Chlorine Binding Sites List in 5f9z
Chlorine binding site 2 out of 2 in the Crystal Structure of Prolyl-Trna Synthetase From Cryptosporidium Parvum Complexed with Halofuginone and Amppnp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Prolyl-Trna Synthetase From Cryptosporidium Parvum Complexed with Halofuginone and Amppnp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl703

b:40.9
occ:1.00
CL1 B:HFG703 0.0 40.9 1.0
C6 B:HFG703 1.8 39.0 1.0
C5 B:HFG703 2.7 35.4 1.0
C7 B:HFG703 2.8 42.0 1.0
BR1 B:HFG703 3.3 52.7 1.0
CE1 B:PHE276 3.3 60.6 1.0
CG B:PRO299 3.4 37.2 1.0
O B:HOH992 3.7 27.8 1.0
CZ B:PHE276 3.8 60.7 1.0
CD1 B:LEU266 3.9 40.8 1.0
CD1 B:PHE276 4.0 60.6 1.0
C10 B:HFG703 4.1 32.9 1.0
C8 B:HFG703 4.1 36.4 1.0
O B:HOH960 4.2 42.5 1.0
O B:HOH1002 4.2 42.8 1.0
CG B:LEU266 4.3 43.8 1.0
CB B:PRO299 4.4 36.2 1.0
CD2 B:LEU266 4.4 43.3 1.0
CD B:PRO299 4.5 35.9 1.0
C9 B:HFG703 4.6 32.6 1.0
CG2 B:VAL280 4.7 39.3 1.0
CE2 B:PHE276 4.8 61.2 1.0
CG2 B:THR300 4.8 26.9 1.0

Reference:

Seattle Structural Genomics Center For Infectious Disease(Ssgcid), D.M.Dranow, D.Fox Iii, D.Lorimer, T.E.Edwards. Crystal Structure of Prolyl-Trna Synthetase From Cryptosporidium Parvum Complexed with Halofuginone and Amppnp To Be Published.
Page generated: Sat Dec 12 11:43:18 2020

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