Chlorine in PDB 5fho: Crystal Structure of the GLUA2 Ligand-Binding Domain (S1S2J) in Complex with (S)-2-Amino-3-(5-(2-(3-Chlorobenzyl)-2H-Tetrazol-5-Yl)- 3-Hydroxyisoxazol-4-Yl)Propanoic Acid at 2.3 A Resolution
Protein crystallography data
The structure of Crystal Structure of the GLUA2 Ligand-Binding Domain (S1S2J) in Complex with (S)-2-Amino-3-(5-(2-(3-Chlorobenzyl)-2H-Tetrazol-5-Yl)- 3-Hydroxyisoxazol-4-Yl)Propanoic Acid at 2.3 A Resolution, PDB code: 5fho
was solved by
K.Frydenvang,
J.S.Kastrup,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
44.05 /
2.30
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
70.983,
109.982,
144.208,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
17.3 /
21.6
|
Chlorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
13;
Binding sites:
The binding sites of Chlorine atom in the Crystal Structure of the GLUA2 Ligand-Binding Domain (S1S2J) in Complex with (S)-2-Amino-3-(5-(2-(3-Chlorobenzyl)-2H-Tetrazol-5-Yl)- 3-Hydroxyisoxazol-4-Yl)Propanoic Acid at 2.3 A Resolution
(pdb code 5fho). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 13 binding sites of Chlorine where determined in the
Crystal Structure of the GLUA2 Ligand-Binding Domain (S1S2J) in Complex with (S)-2-Amino-3-(5-(2-(3-Chlorobenzyl)-2H-Tetrazol-5-Yl)- 3-Hydroxyisoxazol-4-Yl)Propanoic Acid at 2.3 A Resolution, PDB code: 5fho:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Chlorine binding site 1 out
of 13 in 5fho
Go back to
Chlorine Binding Sites List in 5fho
Chlorine binding site 1 out
of 13 in the Crystal Structure of the GLUA2 Ligand-Binding Domain (S1S2J) in Complex with (S)-2-Amino-3-(5-(2-(3-Chlorobenzyl)-2H-Tetrazol-5-Yl)- 3-Hydroxyisoxazol-4-Yl)Propanoic Acid at 2.3 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of the GLUA2 Ligand-Binding Domain (S1S2J) in Complex with (S)-2-Amino-3-(5-(2-(3-Chlorobenzyl)-2H-Tetrazol-5-Yl)- 3-Hydroxyisoxazol-4-Yl)Propanoic Acid at 2.3 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl301
b:50.9
occ:1.00
|
CL1
|
A:5XN301
|
0.0
|
50.9
|
1.0
|
C13
|
A:5XN301
|
1.7
|
37.6
|
1.0
|
C12
|
A:5XN301
|
2.7
|
38.1
|
1.0
|
C14
|
A:5XN301
|
2.7
|
35.0
|
1.0
|
H12
|
A:5XN301
|
2.9
|
45.7
|
1.0
|
H14
|
A:5XN301
|
2.9
|
42.0
|
1.0
|
HE2
|
A:TYR16
|
2.9
|
35.3
|
1.0
|
HA
|
A:MET196
|
3.0
|
41.7
|
1.0
|
HB
|
A:THR195
|
3.1
|
41.0
|
1.0
|
O
|
A:THR195
|
3.1
|
34.6
|
1.0
|
HZ2
|
A:TRP255
|
3.2
|
38.4
|
1.0
|
HB2
|
A:TYR199
|
3.3
|
40.8
|
1.0
|
HD2
|
A:PRO15
|
3.4
|
38.0
|
1.0
|
C
|
A:THR195
|
3.4
|
31.5
|
1.0
|
HB3
|
A:TYR199
|
3.4
|
40.8
|
1.0
|
N
|
A:MET196
|
3.7
|
28.8
|
1.0
|
CE2
|
A:TYR16
|
3.7
|
29.4
|
1.0
|
HD3
|
A:PRO15
|
3.7
|
38.0
|
1.0
|
CB
|
A:TYR199
|
3.7
|
34.0
|
1.0
|
CA
|
A:MET196
|
3.7
|
34.7
|
1.0
|
HE1
|
A:TRP255
|
3.8
|
46.6
|
1.0
|
CB
|
A:THR195
|
3.9
|
34.2
|
1.0
|
CZ2
|
A:TRP255
|
4.0
|
32.0
|
1.0
|
CD
|
A:PRO15
|
4.0
|
31.6
|
1.0
|
C17
|
A:5XN301
|
4.0
|
46.3
|
1.0
|
C15
|
A:5XN301
|
4.0
|
38.2
|
1.0
|
HB2
|
A:MET196
|
4.1
|
39.4
|
1.0
|
CG
|
A:TYR199
|
4.1
|
38.2
|
1.0
|
O
|
A:HOH436
|
4.2
|
34.4
|
1.0
|
H
|
A:MET196
|
4.2
|
34.5
|
1.0
|
CA
|
A:THR195
|
4.2
|
31.3
|
1.0
|
O
|
A:SER14
|
4.2
|
35.1
|
1.0
|
HD2
|
A:TYR16
|
4.3
|
39.5
|
1.0
|
NE1
|
A:TRP255
|
4.4
|
38.8
|
1.0
|
OG1
|
A:THR195
|
4.4
|
30.6
|
1.0
|
CB
|
A:MET196
|
4.5
|
32.9
|
1.0
|
HA
|
A:THR195
|
4.5
|
37.5
|
1.0
|
CD2
|
A:TYR16
|
4.5
|
32.9
|
1.0
|
OH
|
A:TYR16
|
4.5
|
33.6
|
1.0
|
CD2
|
A:TYR199
|
4.5
|
44.5
|
1.0
|
C16
|
A:5XN301
|
4.5
|
42.0
|
1.0
|
CE2
|
A:TRP255
|
4.6
|
35.0
|
1.0
|
CZ
|
A:TYR16
|
4.6
|
32.9
|
1.0
|
HD2
|
A:TYR199
|
4.6
|
53.4
|
1.0
|
CD1
|
A:TYR199
|
4.6
|
43.8
|
1.0
|
HG1
|
A:THR195
|
4.6
|
36.8
|
1.0
|
HG3
|
A:MET196
|
4.7
|
44.6
|
1.0
|
HD1
|
A:TYR199
|
4.7
|
52.5
|
1.0
|
H
|
A:TYR199
|
4.8
|
45.4
|
1.0
|
H17
|
A:5XN301
|
4.9
|
55.5
|
1.0
|
C
|
A:MET196
|
4.9
|
31.2
|
1.0
|
|
Chlorine binding site 2 out
of 13 in 5fho
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Chlorine Binding Sites List in 5fho
Chlorine binding site 2 out
of 13 in the Crystal Structure of the GLUA2 Ligand-Binding Domain (S1S2J) in Complex with (S)-2-Amino-3-(5-(2-(3-Chlorobenzyl)-2H-Tetrazol-5-Yl)- 3-Hydroxyisoxazol-4-Yl)Propanoic Acid at 2.3 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of the GLUA2 Ligand-Binding Domain (S1S2J) in Complex with (S)-2-Amino-3-(5-(2-(3-Chlorobenzyl)-2H-Tetrazol-5-Yl)- 3-Hydroxyisoxazol-4-Yl)Propanoic Acid at 2.3 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl307
b:58.3
occ:1.00
|
HG1
|
A:THR5
|
2.9
|
57.5
|
1.0
|
H
|
A:THR5
|
2.9
|
55.3
|
1.0
|
HB
|
A:THR5
|
3.4
|
49.4
|
1.0
|
HB2
|
A:LYS4
|
3.5
|
63.4
|
1.0
|
OG1
|
A:THR5
|
3.6
|
47.9
|
1.0
|
N
|
A:THR5
|
3.8
|
46.1
|
1.0
|
CB
|
A:THR5
|
3.9
|
41.2
|
1.0
|
HA
|
A:LYS4
|
4.2
|
59.3
|
1.0
|
CB
|
A:LYS4
|
4.3
|
52.9
|
1.0
|
CA
|
A:THR5
|
4.5
|
40.5
|
1.0
|
CA
|
A:LYS4
|
4.6
|
49.4
|
1.0
|
HB3
|
A:LYS4
|
4.7
|
63.4
|
1.0
|
C
|
A:LYS4
|
4.7
|
49.4
|
1.0
|
|
Chlorine binding site 3 out
of 13 in 5fho
Go back to
Chlorine Binding Sites List in 5fho
Chlorine binding site 3 out
of 13 in the Crystal Structure of the GLUA2 Ligand-Binding Domain (S1S2J) in Complex with (S)-2-Amino-3-(5-(2-(3-Chlorobenzyl)-2H-Tetrazol-5-Yl)- 3-Hydroxyisoxazol-4-Yl)Propanoic Acid at 2.3 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of the GLUA2 Ligand-Binding Domain (S1S2J) in Complex with (S)-2-Amino-3-(5-(2-(3-Chlorobenzyl)-2H-Tetrazol-5-Yl)- 3-Hydroxyisoxazol-4-Yl)Propanoic Acid at 2.3 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl308
b:65.6
occ:1.00
|
H
|
A:SER108
|
2.7
|
30.7
|
1.0
|
HG3
|
A:MET107
|
3.3
|
47.0
|
1.0
|
HA
|
A:MET107
|
3.3
|
31.7
|
1.0
|
O
|
A:HOH470
|
3.4
|
41.6
|
1.0
|
HB2
|
A:SER108
|
3.5
|
29.8
|
1.0
|
N
|
A:SER108
|
3.5
|
25.6
|
1.0
|
CG
|
A:MET107
|
4.1
|
39.1
|
1.0
|
HG2
|
A:MET107
|
4.1
|
47.0
|
1.0
|
CA
|
A:MET107
|
4.1
|
26.4
|
1.0
|
CB
|
A:SER108
|
4.1
|
24.8
|
1.0
|
OG
|
A:SER108
|
4.2
|
34.6
|
1.0
|
C
|
A:MET107
|
4.3
|
25.6
|
1.0
|
CA
|
A:SER108
|
4.4
|
32.4
|
1.0
|
HG
|
A:SER108
|
4.4
|
41.5
|
1.0
|
O
|
A:SER108
|
4.5
|
33.6
|
1.0
|
CB
|
A:MET107
|
4.7
|
30.4
|
1.0
|
C
|
A:SER108
|
4.9
|
32.5
|
1.0
|
HB2
|
A:MET107
|
5.0
|
36.4
|
1.0
|
|
Chlorine binding site 4 out
of 13 in 5fho
Go back to
Chlorine Binding Sites List in 5fho
Chlorine binding site 4 out
of 13 in the Crystal Structure of the GLUA2 Ligand-Binding Domain (S1S2J) in Complex with (S)-2-Amino-3-(5-(2-(3-Chlorobenzyl)-2H-Tetrazol-5-Yl)- 3-Hydroxyisoxazol-4-Yl)Propanoic Acid at 2.3 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of the GLUA2 Ligand-Binding Domain (S1S2J) in Complex with (S)-2-Amino-3-(5-(2-(3-Chlorobenzyl)-2H-Tetrazol-5-Yl)- 3-Hydroxyisoxazol-4-Yl)Propanoic Acid at 2.3 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl301
b:39.4
occ:1.00
|
CL1
|
B:5XN301
|
0.0
|
39.4
|
1.0
|
C13
|
B:5XN301
|
1.7
|
32.6
|
1.0
|
C12
|
B:5XN301
|
2.7
|
34.9
|
1.0
|
C14
|
B:5XN301
|
2.7
|
27.3
|
1.0
|
HE2
|
B:TYR16
|
2.8
|
29.9
|
1.0
|
H12
|
B:5XN301
|
2.9
|
41.9
|
1.0
|
H14
|
B:5XN301
|
2.9
|
32.8
|
1.0
|
HA
|
B:MET196
|
2.9
|
25.4
|
1.0
|
HB
|
B:THR195
|
3.0
|
26.4
|
1.0
|
HZ2
|
B:TRP255
|
3.2
|
35.4
|
1.0
|
HB2
|
B:TYR199
|
3.3
|
36.5
|
1.0
|
O
|
B:THR195
|
3.4
|
21.6
|
1.0
|
HD2
|
B:PRO15
|
3.4
|
35.9
|
1.0
|
C
|
B:THR195
|
3.4
|
19.9
|
1.0
|
N
|
B:MET196
|
3.5
|
21.6
|
1.0
|
HB3
|
B:TYR199
|
3.6
|
36.5
|
1.0
|
CA
|
B:MET196
|
3.6
|
21.1
|
1.0
|
CE2
|
B:TYR16
|
3.7
|
24.9
|
1.0
|
CB
|
B:THR195
|
3.8
|
22.0
|
1.0
|
CB
|
B:TYR199
|
3.9
|
30.5
|
1.0
|
HB2
|
B:MET196
|
3.9
|
28.8
|
1.0
|
HD3
|
B:PRO15
|
3.9
|
35.9
|
1.0
|
O
|
B:HOH437
|
4.0
|
26.9
|
1.0
|
HE1
|
B:TRP255
|
4.0
|
42.9
|
1.0
|
H
|
B:MET196
|
4.0
|
25.9
|
1.0
|
C17
|
B:5XN301
|
4.0
|
35.2
|
1.0
|
C15
|
B:5XN301
|
4.0
|
32.1
|
1.0
|
CZ2
|
B:TRP255
|
4.1
|
29.5
|
1.0
|
CD
|
B:PRO15
|
4.1
|
29.9
|
1.0
|
OG1
|
B:THR195
|
4.2
|
28.1
|
1.0
|
CA
|
B:THR195
|
4.2
|
21.1
|
1.0
|
HD2
|
B:TYR16
|
4.3
|
32.0
|
1.0
|
CG
|
B:TYR199
|
4.3
|
27.0
|
1.0
|
HG1
|
B:THR195
|
4.3
|
33.7
|
1.0
|
CB
|
B:MET196
|
4.3
|
24.0
|
1.0
|
O
|
B:SER14
|
4.4
|
30.7
|
1.0
|
CD2
|
B:TYR16
|
4.4
|
26.7
|
1.0
|
OH
|
B:TYR16
|
4.5
|
34.5
|
1.0
|
HA
|
B:THR195
|
4.5
|
25.4
|
1.0
|
CZ
|
B:TYR16
|
4.5
|
27.0
|
1.0
|
C16
|
B:5XN301
|
4.5
|
33.9
|
1.0
|
NE1
|
B:TRP255
|
4.5
|
35.7
|
1.0
|
HG3
|
B:MET196
|
4.6
|
33.6
|
1.0
|
CE2
|
B:TRP255
|
4.7
|
37.0
|
1.0
|
H
|
B:TYR199
|
4.8
|
27.9
|
1.0
|
CD1
|
B:TYR199
|
4.8
|
29.4
|
1.0
|
HD1
|
B:TYR199
|
4.8
|
35.3
|
1.0
|
C
|
B:MET196
|
4.8
|
20.8
|
1.0
|
CD2
|
B:TYR199
|
4.9
|
31.6
|
1.0
|
H17
|
B:5XN301
|
4.9
|
42.2
|
1.0
|
HD2
|
B:TYR199
|
4.9
|
38.0
|
1.0
|
|
Chlorine binding site 5 out
of 13 in 5fho
Go back to
Chlorine Binding Sites List in 5fho
Chlorine binding site 5 out
of 13 in the Crystal Structure of the GLUA2 Ligand-Binding Domain (S1S2J) in Complex with (S)-2-Amino-3-(5-(2-(3-Chlorobenzyl)-2H-Tetrazol-5-Yl)- 3-Hydroxyisoxazol-4-Yl)Propanoic Acid at 2.3 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of the GLUA2 Ligand-Binding Domain (S1S2J) in Complex with (S)-2-Amino-3-(5-(2-(3-Chlorobenzyl)-2H-Tetrazol-5-Yl)- 3-Hydroxyisoxazol-4-Yl)Propanoic Acid at 2.3 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl309
b:53.7
occ:1.00
|
HB2
|
B:LYS218
|
2.7
|
35.4
|
1.0
|
HB
|
B:ILE92
|
2.7
|
25.8
|
1.0
|
H
|
B:GLY219
|
2.7
|
26.4
|
1.0
|
HB3
|
B:LYS218
|
3.1
|
35.4
|
1.0
|
HA
|
B:LYS218
|
3.2
|
32.7
|
1.0
|
CB
|
B:LYS218
|
3.2
|
29.5
|
1.0
|
O
|
B:ILE92
|
3.4
|
23.0
|
1.0
|
N
|
B:GLY219
|
3.4
|
22.0
|
1.0
|
CA
|
B:LYS218
|
3.6
|
27.2
|
1.0
|
CB
|
B:ILE92
|
3.6
|
21.5
|
1.0
|
HG22
|
B:ILE92
|
3.7
|
30.0
|
1.0
|
O
|
C:HOH509
|
3.9
|
36.2
|
1.0
|
HG21
|
B:ILE92
|
3.9
|
30.0
|
1.0
|
HD22
|
C:LEU239
|
3.9
|
32.1
|
1.0
|
C
|
B:LYS218
|
4.0
|
19.7
|
1.0
|
CG2
|
B:ILE92
|
4.0
|
25.0
|
1.0
|
HD12
|
B:ILE92
|
4.0
|
25.4
|
1.0
|
HD22
|
C:ASN242
|
4.1
|
44.4
|
1.0
|
C
|
B:ILE92
|
4.1
|
19.5
|
1.0
|
O
|
B:GLY219
|
4.2
|
17.1
|
1.0
|
CA
|
B:ILE92
|
4.3
|
19.5
|
1.0
|
H
|
B:ILE92
|
4.3
|
23.9
|
1.0
|
HD23
|
C:LEU239
|
4.4
|
32.1
|
1.0
|
HD21
|
C:ASN242
|
4.4
|
44.4
|
1.0
|
HD21
|
C:LEU239
|
4.5
|
32.1
|
1.0
|
CA
|
B:GLY219
|
4.5
|
22.1
|
1.0
|
CD2
|
C:LEU239
|
4.5
|
26.8
|
1.0
|
HA3
|
B:GLY219
|
4.5
|
26.5
|
1.0
|
ND2
|
C:ASN242
|
4.6
|
37.0
|
1.0
|
CD1
|
B:ILE92
|
4.6
|
21.1
|
1.0
|
HD13
|
B:ILE92
|
4.6
|
25.4
|
1.0
|
CG
|
B:LYS218
|
4.6
|
30.0
|
1.0
|
CG1
|
B:ILE92
|
4.6
|
20.2
|
1.0
|
HD2
|
B:LYS218
|
4.6
|
38.2
|
1.0
|
HG2
|
C:LYS104
|
4.7
|
31.0
|
1.0
|
N
|
B:ILE92
|
4.7
|
19.9
|
1.0
|
C
|
B:GLY219
|
4.8
|
18.9
|
1.0
|
HG3
|
B:LYS218
|
4.9
|
36.0
|
1.0
|
HA
|
B:THR93
|
4.9
|
25.4
|
1.0
|
HG23
|
B:ILE92
|
4.9
|
30.0
|
1.0
|
HG13
|
B:ILE92
|
4.9
|
24.3
|
1.0
|
N
|
B:LYS218
|
5.0
|
21.9
|
1.0
|
|
Chlorine binding site 6 out
of 13 in 5fho
Go back to
Chlorine Binding Sites List in 5fho
Chlorine binding site 6 out
of 13 in the Crystal Structure of the GLUA2 Ligand-Binding Domain (S1S2J) in Complex with (S)-2-Amino-3-(5-(2-(3-Chlorobenzyl)-2H-Tetrazol-5-Yl)- 3-Hydroxyisoxazol-4-Yl)Propanoic Acid at 2.3 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of the GLUA2 Ligand-Binding Domain (S1S2J) in Complex with (S)-2-Amino-3-(5-(2-(3-Chlorobenzyl)-2H-Tetrazol-5-Yl)- 3-Hydroxyisoxazol-4-Yl)Propanoic Acid at 2.3 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl310
b:55.3
occ:1.00
|
H
|
B:SER168
|
2.4
|
27.0
|
1.0
|
N
|
B:SER168
|
3.2
|
22.5
|
1.0
|
HB3
|
B:SER168
|
3.2
|
27.2
|
1.0
|
HA
|
B:PRO167
|
3.4
|
30.2
|
1.0
|
HB2
|
B:SER168
|
3.4
|
27.2
|
1.0
|
CB
|
B:SER168
|
3.7
|
22.7
|
1.0
|
HB2
|
B:PRO167
|
3.7
|
24.1
|
1.0
|
O
|
B:HOH435
|
3.8
|
34.7
|
1.0
|
HB3
|
B:PRO167
|
3.9
|
24.1
|
1.0
|
CA
|
B:PRO167
|
4.0
|
25.2
|
1.0
|
CB
|
B:PRO167
|
4.0
|
20.1
|
1.0
|
CA
|
B:SER168
|
4.1
|
20.4
|
1.0
|
C
|
B:PRO167
|
4.1
|
23.2
|
1.0
|
H11
|
B:EDO313
|
4.5
|
46.5
|
1.0
|
HA
|
B:SER168
|
4.7
|
24.4
|
1.0
|
HO1
|
B:EDO313
|
4.8
|
52.6
|
1.0
|
|
Chlorine binding site 7 out
of 13 in 5fho
Go back to
Chlorine Binding Sites List in 5fho
Chlorine binding site 7 out
of 13 in the Crystal Structure of the GLUA2 Ligand-Binding Domain (S1S2J) in Complex with (S)-2-Amino-3-(5-(2-(3-Chlorobenzyl)-2H-Tetrazol-5-Yl)- 3-Hydroxyisoxazol-4-Yl)Propanoic Acid at 2.3 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Crystal Structure of the GLUA2 Ligand-Binding Domain (S1S2J) in Complex with (S)-2-Amino-3-(5-(2-(3-Chlorobenzyl)-2H-Tetrazol-5-Yl)- 3-Hydroxyisoxazol-4-Yl)Propanoic Acid at 2.3 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl311
b:58.1
occ:1.00
|
H
|
B:TYR51
|
2.8
|
31.0
|
1.0
|
HA
|
B:LYS50
|
3.4
|
48.7
|
1.0
|
O
|
B:HOH511
|
3.5
|
33.4
|
1.0
|
HE1
|
B:TYR51
|
3.5
|
31.2
|
1.0
|
CE1
|
B:TYR51
|
3.5
|
26.0
|
1.0
|
CD1
|
B:TYR51
|
3.6
|
27.3
|
1.0
|
HD1
|
B:TYR51
|
3.6
|
32.8
|
1.0
|
N
|
B:TYR51
|
3.6
|
25.8
|
1.0
|
HB3
|
B:LYS50
|
3.6
|
50.9
|
1.0
|
O
|
B:TYR51
|
3.7
|
24.0
|
1.0
|
HD22
|
B:ASN29
|
3.8
|
36.2
|
1.0
|
HE2
|
B:LYS50
|
3.8
|
87.4
|
1.0
|
HE3
|
B:LYS50
|
3.8
|
87.4
|
1.0
|
CA
|
B:LYS50
|
4.1
|
40.6
|
1.0
|
HD21
|
B:ASN29
|
4.1
|
36.2
|
1.0
|
HG2
|
B:LYS50
|
4.2
|
61.1
|
1.0
|
CZ
|
B:TYR51
|
4.2
|
25.5
|
1.0
|
CB
|
B:LYS50
|
4.2
|
42.4
|
1.0
|
ND2
|
B:ASN29
|
4.3
|
30.2
|
1.0
|
CE
|
B:LYS50
|
4.3
|
72.8
|
1.0
|
CG
|
B:TYR51
|
4.3
|
25.5
|
1.0
|
C
|
B:LYS50
|
4.4
|
28.5
|
1.0
|
C
|
B:TYR51
|
4.5
|
28.2
|
1.0
|
CA
|
B:TYR51
|
4.6
|
29.6
|
1.0
|
CG
|
B:LYS50
|
4.7
|
50.9
|
1.0
|
CE2
|
B:TYR51
|
4.8
|
26.2
|
1.0
|
OH
|
B:TYR51
|
4.8
|
29.9
|
1.0
|
CD2
|
B:TYR51
|
4.8
|
22.9
|
1.0
|
|
Chlorine binding site 8 out
of 13 in 5fho
Go back to
Chlorine Binding Sites List in 5fho
Chlorine binding site 8 out
of 13 in the Crystal Structure of the GLUA2 Ligand-Binding Domain (S1S2J) in Complex with (S)-2-Amino-3-(5-(2-(3-Chlorobenzyl)-2H-Tetrazol-5-Yl)- 3-Hydroxyisoxazol-4-Yl)Propanoic Acid at 2.3 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Crystal Structure of the GLUA2 Ligand-Binding Domain (S1S2J) in Complex with (S)-2-Amino-3-(5-(2-(3-Chlorobenzyl)-2H-Tetrazol-5-Yl)- 3-Hydroxyisoxazol-4-Yl)Propanoic Acid at 2.3 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl301
b:38.5
occ:1.00
|
CL1
|
C:5XN301
|
0.0
|
38.5
|
1.0
|
C13
|
C:5XN301
|
1.7
|
31.8
|
1.0
|
C12
|
C:5XN301
|
2.7
|
32.1
|
1.0
|
HZ3
|
C:TRP255
|
2.7
|
63.4
|
0.4
|
C14
|
C:5XN301
|
2.7
|
26.9
|
1.0
|
HA
|
C:MET196
|
2.8
|
26.8
|
1.0
|
H12
|
C:5XN301
|
2.9
|
38.6
|
1.0
|
H14
|
C:5XN301
|
2.9
|
32.2
|
1.0
|
HE2
|
C:TYR16
|
2.9
|
33.8
|
1.0
|
HB
|
C:THR195
|
3.1
|
32.4
|
1.0
|
HB2
|
C:TYR199
|
3.1
|
32.2
|
1.0
|
HE1
|
C:TRP255
|
3.2
|
65.2
|
0.6
|
HD2
|
C:PRO15
|
3.3
|
29.4
|
1.0
|
C
|
C:THR195
|
3.5
|
21.8
|
1.0
|
O
|
C:THR195
|
3.5
|
23.8
|
1.0
|
N
|
C:MET196
|
3.5
|
20.7
|
1.0
|
CZ3
|
C:TRP255
|
3.5
|
52.8
|
0.4
|
HB3
|
C:TYR199
|
3.6
|
32.2
|
1.0
|
CA
|
C:MET196
|
3.6
|
22.4
|
1.0
|
HD3
|
C:PRO15
|
3.6
|
29.4
|
1.0
|
HZ2
|
C:TRP255
|
3.6
|
62.3
|
0.6
|
CE2
|
C:TYR16
|
3.7
|
28.2
|
1.0
|
CB
|
C:TYR199
|
3.7
|
26.8
|
1.0
|
HB2
|
C:MET196
|
3.8
|
30.1
|
1.0
|
NE1
|
C:TRP255
|
3.8
|
54.3
|
0.6
|
CD
|
C:PRO15
|
3.9
|
24.5
|
1.0
|
H
|
C:MET196
|
3.9
|
24.9
|
1.0
|
HH2
|
C:TRP255
|
3.9
|
61.5
|
0.4
|
CB
|
C:THR195
|
4.0
|
27.0
|
1.0
|
C17
|
C:5XN301
|
4.0
|
36.6
|
1.0
|
C15
|
C:5XN301
|
4.0
|
32.8
|
1.0
|
CG
|
C:TYR199
|
4.1
|
26.1
|
1.0
|
CH2
|
C:TRP255
|
4.2
|
51.2
|
0.4
|
CZ2
|
C:TRP255
|
4.2
|
51.9
|
0.6
|
CB
|
C:MET196
|
4.2
|
25.1
|
1.0
|
HD2
|
C:TYR16
|
4.3
|
32.2
|
1.0
|
CA
|
C:THR195
|
4.3
|
20.7
|
1.0
|
HD1
|
C:TYR199
|
4.3
|
41.9
|
1.0
|
CE2
|
C:TRP255
|
4.3
|
54.3
|
0.6
|
CD1
|
C:TYR199
|
4.4
|
35.0
|
1.0
|
OG1
|
C:THR195
|
4.4
|
26.0
|
1.0
|
CD2
|
C:TYR16
|
4.5
|
26.9
|
1.0
|
OH
|
C:TYR16
|
4.5
|
38.6
|
1.0
|
CE3
|
C:TRP255
|
4.5
|
53.1
|
0.4
|
O
|
C:SER14
|
4.5
|
23.4
|
1.0
|
HE3
|
C:TRP255
|
4.5
|
63.8
|
0.4
|
HG3
|
C:MET196
|
4.5
|
30.4
|
1.0
|
HG1
|
C:THR195
|
4.5
|
31.2
|
1.0
|
C16
|
C:5XN301
|
4.5
|
37.3
|
1.0
|
CZ
|
C:TYR16
|
4.6
|
26.2
|
1.0
|
HA
|
C:THR195
|
4.6
|
24.8
|
1.0
|
CD2
|
C:TYR199
|
4.7
|
26.3
|
1.0
|
H
|
C:TYR199
|
4.7
|
28.7
|
1.0
|
HG3
|
C:PRO15
|
4.8
|
30.9
|
1.0
|
C
|
C:MET196
|
4.8
|
19.4
|
1.0
|
CG
|
C:PRO15
|
4.8
|
25.8
|
1.0
|
H17
|
C:5XN301
|
4.9
|
43.9
|
1.0
|
HG2
|
C:PRO15
|
4.9
|
30.9
|
1.0
|
HD2
|
C:TYR199
|
4.9
|
31.5
|
1.0
|
CD1
|
C:TRP255
|
4.9
|
51.9
|
0.6
|
CG
|
C:MET196
|
5.0
|
25.3
|
1.0
|
|
Chlorine binding site 9 out
of 13 in 5fho
Go back to
Chlorine Binding Sites List in 5fho
Chlorine binding site 9 out
of 13 in the Crystal Structure of the GLUA2 Ligand-Binding Domain (S1S2J) in Complex with (S)-2-Amino-3-(5-(2-(3-Chlorobenzyl)-2H-Tetrazol-5-Yl)- 3-Hydroxyisoxazol-4-Yl)Propanoic Acid at 2.3 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 9 of Crystal Structure of the GLUA2 Ligand-Binding Domain (S1S2J) in Complex with (S)-2-Amino-3-(5-(2-(3-Chlorobenzyl)-2H-Tetrazol-5-Yl)- 3-Hydroxyisoxazol-4-Yl)Propanoic Acid at 2.3 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl306
b:58.1
occ:1.00
|
H
|
C:SER108
|
2.7
|
30.0
|
1.0
|
HA
|
C:MET107
|
3.3
|
28.3
|
1.0
|
HG3
|
C:MET107
|
3.3
|
46.2
|
1.0
|
HB2
|
C:SER108
|
3.4
|
32.2
|
1.0
|
N
|
C:SER108
|
3.5
|
25.0
|
1.0
|
HG2
|
C:MET107
|
3.9
|
46.2
|
1.0
|
CG
|
C:MET107
|
4.0
|
38.5
|
1.0
|
O
|
C:HOH498
|
4.1
|
37.4
|
1.0
|
CA
|
C:MET107
|
4.1
|
23.6
|
1.0
|
CB
|
C:SER108
|
4.1
|
26.8
|
1.0
|
OG
|
C:SER108
|
4.2
|
37.5
|
1.0
|
C
|
C:MET107
|
4.3
|
24.1
|
1.0
|
CA
|
C:SER108
|
4.4
|
26.8
|
1.0
|
O
|
C:SER108
|
4.6
|
30.5
|
1.0
|
CB
|
C:MET107
|
4.7
|
29.3
|
1.0
|
HD2
|
C:LYS251
|
4.7
|
56.9
|
1.0
|
HG
|
C:SER108
|
4.9
|
45.0
|
1.0
|
C
|
C:SER108
|
5.0
|
28.2
|
1.0
|
HB3
|
C:SER108
|
5.0
|
32.2
|
1.0
|
|
Chlorine binding site 10 out
of 13 in 5fho
Go back to
Chlorine Binding Sites List in 5fho
Chlorine binding site 10 out
of 13 in the Crystal Structure of the GLUA2 Ligand-Binding Domain (S1S2J) in Complex with (S)-2-Amino-3-(5-(2-(3-Chlorobenzyl)-2H-Tetrazol-5-Yl)- 3-Hydroxyisoxazol-4-Yl)Propanoic Acid at 2.3 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 10 of Crystal Structure of the GLUA2 Ligand-Binding Domain (S1S2J) in Complex with (S)-2-Amino-3-(5-(2-(3-Chlorobenzyl)-2H-Tetrazol-5-Yl)- 3-Hydroxyisoxazol-4-Yl)Propanoic Acid at 2.3 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl301
b:49.0
occ:1.00
|
CL1
|
D:5XN301
|
0.0
|
49.0
|
1.0
|
C13
|
D:5XN301
|
1.7
|
35.9
|
1.0
|
C12
|
D:5XN301
|
2.7
|
40.4
|
1.0
|
C14
|
D:5XN301
|
2.7
|
36.8
|
1.0
|
HA
|
D:MET196
|
2.8
|
34.2
|
1.0
|
H12
|
D:5XN301
|
2.9
|
48.4
|
1.0
|
H14
|
D:5XN301
|
2.9
|
44.1
|
1.0
|
HE2
|
D:TYR16
|
2.9
|
39.7
|
1.0
|
HZ2
|
D:TRP255
|
3.1
|
54.8
|
1.0
|
HB
|
D:THR195
|
3.3
|
39.7
|
1.0
|
HB2
|
D:TYR199
|
3.3
|
40.6
|
1.0
|
HD2
|
D:PRO15
|
3.4
|
44.3
|
1.0
|
O
|
D:THR195
|
3.5
|
27.4
|
1.0
|
C
|
D:THR195
|
3.6
|
25.1
|
1.0
|
CA
|
D:MET196
|
3.6
|
28.5
|
1.0
|
HB3
|
D:TYR199
|
3.7
|
40.6
|
1.0
|
N
|
D:MET196
|
3.7
|
28.7
|
1.0
|
HE1
|
D:TRP255
|
3.7
|
60.0
|
1.0
|
CE2
|
D:TYR16
|
3.7
|
33.1
|
1.0
|
HB2
|
D:MET196
|
3.8
|
35.1
|
1.0
|
CB
|
D:TYR199
|
3.8
|
33.8
|
1.0
|
HD3
|
D:PRO15
|
3.9
|
44.3
|
1.0
|
CZ2
|
D:TRP255
|
4.0
|
45.7
|
1.0
|
C17
|
D:5XN301
|
4.0
|
45.2
|
1.0
|
C15
|
D:5XN301
|
4.0
|
34.3
|
1.0
|
CD
|
D:PRO15
|
4.1
|
36.9
|
1.0
|
CB
|
D:THR195
|
4.1
|
33.1
|
1.0
|
CG
|
D:TYR199
|
4.1
|
34.1
|
1.0
|
H
|
D:MET196
|
4.1
|
34.4
|
1.0
|
CB
|
D:MET196
|
4.2
|
29.3
|
1.0
|
NE1
|
D:TRP255
|
4.3
|
50.0
|
1.0
|
OH
|
D:TYR16
|
4.3
|
40.2
|
1.0
|
HG3
|
D:MET196
|
4.4
|
38.2
|
1.0
|
HD2
|
D:TYR16
|
4.4
|
42.2
|
1.0
|
CA
|
D:THR195
|
4.4
|
27.9
|
1.0
|
HD1
|
D:TYR199
|
4.5
|
50.7
|
1.0
|
CD1
|
D:TYR199
|
4.5
|
42.3
|
1.0
|
CZ
|
D:TYR16
|
4.5
|
36.0
|
1.0
|
CE2
|
D:TRP255
|
4.5
|
50.2
|
1.0
|
OG1
|
D:THR195
|
4.5
|
32.6
|
1.0
|
CD2
|
D:TYR16
|
4.5
|
35.2
|
1.0
|
C16
|
D:5XN301
|
4.5
|
41.3
|
1.0
|
O
|
D:SER14
|
4.6
|
37.4
|
1.0
|
HG1
|
D:THR195
|
4.7
|
39.2
|
1.0
|
CD2
|
D:TYR199
|
4.7
|
36.7
|
1.0
|
HA
|
D:THR195
|
4.7
|
33.5
|
1.0
|
C
|
D:MET196
|
4.8
|
27.8
|
1.0
|
H
|
D:TYR199
|
4.9
|
42.0
|
1.0
|
HD2
|
D:TYR199
|
4.9
|
44.0
|
1.0
|
H17
|
D:5XN301
|
4.9
|
54.2
|
1.0
|
CG
|
D:MET196
|
4.9
|
31.9
|
1.0
|
|
Reference:
S.Y.Wang,
Y.Larsen,
C.V.Navarrete,
A.A.Jensen,
B.Nielsen,
A.Al-Musaed,
K.Frydenvang,
J.S.Kastrup,
D.S.Pickering,
R.P.Clausen.
Tweaking Subtype Selectivity and Agonist Efficacy at (S)-2-Amino-3-(3-Hydroxy-5-Methyl-Isoxazol-4-Yl)Propionic Acid (Ampa) Receptors in A Small Series of Bntetampa Analogues. J.Med.Chem. V. 59 2244 2016.
ISSN: ISSN 0022-2623
PubMed: 26862980
DOI: 10.1021/ACS.JMEDCHEM.5B01982
Page generated: Fri Jul 26 07:54:11 2024
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