Chlorine in PDB 5fjg: The Crystal Structure of Light-Driven Chloride Pump Clr in pH 4.5.
Protein crystallography data
The structure of The Crystal Structure of Light-Driven Chloride Pump Clr in pH 4.5., PDB code: 5fjg
was solved by
K.L.Kim,
S.K.Kwon,
S.H.Jun,
J.S.Cha,
H.Y.Kim,
J.H.Kim,
H.S.Cho,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
38.670 /
2.00
|
Space group
|
I 1 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
77.027,
49.434,
77.912,
90.00,
96.94,
90.00
|
R / Rfree (%)
|
16.68 /
21.91
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the The Crystal Structure of Light-Driven Chloride Pump Clr in pH 4.5.
(pdb code 5fjg). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the
The Crystal Structure of Light-Driven Chloride Pump Clr in pH 4.5., PDB code: 5fjg:
Jump to Chlorine binding site number:
1;
2;
3;
Chlorine binding site 1 out
of 3 in 5fjg
Go back to
Chlorine Binding Sites List in 5fjg
Chlorine binding site 1 out
of 3 in the The Crystal Structure of Light-Driven Chloride Pump Clr in pH 4.5.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of The Crystal Structure of Light-Driven Chloride Pump Clr in pH 4.5. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1267
b:38.3
occ:1.00
|
HD21
|
A:ASN98
|
2.2
|
27.1
|
1.0
|
HG1
|
A:THR102
|
2.3
|
29.3
|
1.0
|
HD1
|
A:TRP99
|
2.7
|
17.2
|
1.0
|
HG22
|
A:THR102
|
3.0
|
33.1
|
1.0
|
ND2
|
A:ASN98
|
3.0
|
22.6
|
1.0
|
OG1
|
A:THR102
|
3.1
|
24.4
|
1.0
|
HZ
|
A:LYS235
|
3.2
|
25.4
|
1.0
|
HE3
|
A:LYS235
|
3.2
|
35.1
|
1.0
|
NZ
|
A:LYS235
|
3.3
|
21.2
|
1.0
|
HB3
|
A:ALA61
|
3.3
|
24.2
|
1.0
|
HD22
|
A:ASN98
|
3.3
|
27.1
|
1.0
|
HB3
|
A:ASN98
|
3.4
|
23.2
|
1.0
|
HA
|
A:ALA61
|
3.5
|
29.9
|
1.0
|
CD1
|
A:TRP99
|
3.5
|
14.4
|
1.0
|
HE1
|
A:TRP99
|
3.6
|
23.2
|
1.0
|
CG2
|
A:THR102
|
3.7
|
27.6
|
1.0
|
CE
|
A:LYS235
|
3.7
|
29.3
|
1.0
|
H14
|
A:ANR1266
|
3.7
|
35.1
|
1.0
|
CB
|
A:THR102
|
3.8
|
20.8
|
1.0
|
NE1
|
A:TRP99
|
3.9
|
19.4
|
1.0
|
HB2
|
A:ALA61
|
3.9
|
24.2
|
1.0
|
HG21
|
A:THR102
|
3.9
|
33.1
|
1.0
|
CB
|
A:ALA61
|
3.9
|
20.1
|
1.0
|
HB
|
A:THR102
|
4.0
|
24.9
|
1.0
|
CG
|
A:ASN98
|
4.0
|
27.4
|
1.0
|
O
|
A:HOH2049
|
4.1
|
23.9
|
1.0
|
CA
|
A:ALA61
|
4.1
|
24.9
|
1.0
|
CB
|
A:ASN98
|
4.1
|
19.3
|
1.0
|
HA
|
A:TRP99
|
4.1
|
23.4
|
1.0
|
HD3
|
A:LYS235
|
4.2
|
23.0
|
1.0
|
C15
|
A:ANR1266
|
4.4
|
21.8
|
1.0
|
C
|
A:ASN98
|
4.5
|
16.8
|
1.0
|
C14
|
A:ANR1266
|
4.5
|
29.2
|
1.0
|
HG23
|
A:THR102
|
4.5
|
33.1
|
1.0
|
O
|
A:ASN98
|
4.6
|
21.1
|
1.0
|
HE2
|
A:LYS235
|
4.6
|
35.1
|
1.0
|
N
|
A:TRP99
|
4.6
|
17.2
|
1.0
|
CD
|
A:LYS235
|
4.6
|
19.1
|
1.0
|
HG13
|
A:ILE64
|
4.6
|
42.2
|
1.0
|
HB
|
A:ILE64
|
4.7
|
34.5
|
1.0
|
N
|
A:ALA61
|
4.7
|
20.9
|
1.0
|
CG
|
A:TRP99
|
4.8
|
14.5
|
1.0
|
H
|
A:TRP99
|
4.8
|
20.6
|
1.0
|
HB2
|
A:ASN98
|
4.8
|
23.2
|
1.0
|
CA
|
A:TRP99
|
4.8
|
19.5
|
1.0
|
HB1
|
A:ALA61
|
4.8
|
24.2
|
1.0
|
O
|
A:ARG95
|
4.9
|
17.6
|
1.0
|
HG22
|
A:ILE64
|
5.0
|
36.1
|
1.0
|
|
Chlorine binding site 2 out
of 3 in 5fjg
Go back to
Chlorine Binding Sites List in 5fjg
Chlorine binding site 2 out
of 3 in the The Crystal Structure of Light-Driven Chloride Pump Clr in pH 4.5.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of The Crystal Structure of Light-Driven Chloride Pump Clr in pH 4.5. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1268
b:42.1
occ:1.00
|
H
|
A:LYS46
|
2.4
|
33.6
|
1.0
|
HB2
|
A:LYS46
|
2.6
|
46.5
|
1.0
|
HD2
|
A:PRO45
|
2.7
|
33.9
|
1.0
|
HB2
|
A:ALA44
|
2.9
|
31.7
|
1.0
|
N
|
A:LYS46
|
3.1
|
28.0
|
1.0
|
HB3
|
A:LYS46
|
3.2
|
46.5
|
1.0
|
CB
|
A:LYS46
|
3.2
|
38.8
|
1.0
|
HB2
|
A:PRO45
|
3.4
|
40.0
|
1.0
|
HE2
|
A:LYS46
|
3.4
|
58.2
|
1.0
|
CD
|
A:PRO45
|
3.5
|
28.2
|
1.0
|
N
|
A:PRO45
|
3.7
|
31.6
|
1.0
|
CA
|
A:LYS46
|
3.7
|
32.1
|
1.0
|
CB
|
A:ALA44
|
3.7
|
26.4
|
1.0
|
HB1
|
A:ALA44
|
3.8
|
31.7
|
1.0
|
HG2
|
A:PRO45
|
3.9
|
34.1
|
1.0
|
CB
|
A:PRO45
|
4.0
|
33.3
|
1.0
|
CG
|
A:PRO45
|
4.0
|
28.4
|
1.0
|
C
|
A:PRO45
|
4.0
|
31.3
|
1.0
|
HA
|
A:LYS46
|
4.1
|
38.5
|
1.0
|
CA
|
A:PRO45
|
4.2
|
34.5
|
1.0
|
C
|
A:ALA44
|
4.2
|
28.6
|
1.0
|
HD3
|
A:PRO45
|
4.2
|
33.9
|
1.0
|
CE
|
A:LYS46
|
4.3
|
48.5
|
1.0
|
HD3
|
A:LYS46
|
4.3
|
57.1
|
1.0
|
HB3
|
A:ALA44
|
4.4
|
31.7
|
1.0
|
CG
|
A:LYS46
|
4.5
|
44.7
|
1.0
|
CA
|
A:ALA44
|
4.5
|
24.9
|
1.0
|
CD
|
A:LYS46
|
4.6
|
47.6
|
1.0
|
HE3
|
A:LYS46
|
4.7
|
58.2
|
1.0
|
HA
|
A:ALA44
|
4.8
|
29.9
|
1.0
|
O
|
A:ALA44
|
4.8
|
26.1
|
1.0
|
H
|
A:TYR47
|
4.9
|
28.1
|
1.0
|
HB3
|
A:PRO45
|
4.9
|
40.0
|
1.0
|
HG3
|
A:PRO45
|
5.0
|
34.1
|
1.0
|
HG3
|
A:LYS46
|
5.0
|
53.7
|
1.0
|
|
Chlorine binding site 3 out
of 3 in 5fjg
Go back to
Chlorine Binding Sites List in 5fjg
Chlorine binding site 3 out
of 3 in the The Crystal Structure of Light-Driven Chloride Pump Clr in pH 4.5.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of The Crystal Structure of Light-Driven Chloride Pump Clr in pH 4.5. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1277
b:44.5
occ:1.00
|
HG
|
A:SER188
|
4.4
|
35.9
|
1.0
|
HB2
|
A:SER188
|
4.4
|
31.8
|
1.0
|
HB3
|
A:SER188
|
4.5
|
31.8
|
1.0
|
O
|
A:HOH2080
|
4.8
|
34.3
|
1.0
|
CB
|
A:SER188
|
4.9
|
26.5
|
1.0
|
|
Reference:
K.L.Kim,
S.K.Kwon,
S.H.Jun,
J.S.Cha,
H.Y.Kim,
J.H.Kim,
H.S.Cho.
The Crystal Structure of Light-Driven Chloride Pump Clr in pH 4.5. To Be Published.
Page generated: Fri Jul 26 07:55:31 2024
|