Chlorine in PDB 5fjg: The Crystal Structure of Light-Driven Chloride Pump Clr in pH 4.5.

Protein crystallography data

The structure of The Crystal Structure of Light-Driven Chloride Pump Clr in pH 4.5., PDB code: 5fjg was solved by K.L.Kim, S.K.Kwon, S.H.Jun, J.S.Cha, H.Y.Kim, J.H.Kim, H.S.Cho, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.670 / 2.00
Space group I 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 77.027, 49.434, 77.912, 90.00, 96.94, 90.00
R / Rfree (%) 16.68 / 21.91

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Crystal Structure of Light-Driven Chloride Pump Clr in pH 4.5. (pdb code 5fjg). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the The Crystal Structure of Light-Driven Chloride Pump Clr in pH 4.5., PDB code: 5fjg:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 5fjg

Go back to Chlorine Binding Sites List in 5fjg
Chlorine binding site 1 out of 3 in the The Crystal Structure of Light-Driven Chloride Pump Clr in pH 4.5.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Crystal Structure of Light-Driven Chloride Pump Clr in pH 4.5. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1267

b:38.3
occ:1.00
HD21 A:ASN98 2.2 27.1 1.0
HG1 A:THR102 2.3 29.3 1.0
HD1 A:TRP99 2.7 17.2 1.0
HG22 A:THR102 3.0 33.1 1.0
ND2 A:ASN98 3.0 22.6 1.0
OG1 A:THR102 3.1 24.4 1.0
HZ A:LYS235 3.2 25.4 1.0
HE3 A:LYS235 3.2 35.1 1.0
NZ A:LYS235 3.3 21.2 1.0
HB3 A:ALA61 3.3 24.2 1.0
HD22 A:ASN98 3.3 27.1 1.0
HB3 A:ASN98 3.4 23.2 1.0
HA A:ALA61 3.5 29.9 1.0
CD1 A:TRP99 3.5 14.4 1.0
HE1 A:TRP99 3.6 23.2 1.0
CG2 A:THR102 3.7 27.6 1.0
CE A:LYS235 3.7 29.3 1.0
H14 A:ANR1266 3.7 35.1 1.0
CB A:THR102 3.8 20.8 1.0
NE1 A:TRP99 3.9 19.4 1.0
HB2 A:ALA61 3.9 24.2 1.0
HG21 A:THR102 3.9 33.1 1.0
CB A:ALA61 3.9 20.1 1.0
HB A:THR102 4.0 24.9 1.0
CG A:ASN98 4.0 27.4 1.0
O A:HOH2049 4.1 23.9 1.0
CA A:ALA61 4.1 24.9 1.0
CB A:ASN98 4.1 19.3 1.0
HA A:TRP99 4.1 23.4 1.0
HD3 A:LYS235 4.2 23.0 1.0
C15 A:ANR1266 4.4 21.8 1.0
C A:ASN98 4.5 16.8 1.0
C14 A:ANR1266 4.5 29.2 1.0
HG23 A:THR102 4.5 33.1 1.0
O A:ASN98 4.6 21.1 1.0
HE2 A:LYS235 4.6 35.1 1.0
N A:TRP99 4.6 17.2 1.0
CD A:LYS235 4.6 19.1 1.0
HG13 A:ILE64 4.6 42.2 1.0
HB A:ILE64 4.7 34.5 1.0
N A:ALA61 4.7 20.9 1.0
CG A:TRP99 4.8 14.5 1.0
H A:TRP99 4.8 20.6 1.0
HB2 A:ASN98 4.8 23.2 1.0
CA A:TRP99 4.8 19.5 1.0
HB1 A:ALA61 4.8 24.2 1.0
O A:ARG95 4.9 17.6 1.0
HG22 A:ILE64 5.0 36.1 1.0

Chlorine binding site 2 out of 3 in 5fjg

Go back to Chlorine Binding Sites List in 5fjg
Chlorine binding site 2 out of 3 in the The Crystal Structure of Light-Driven Chloride Pump Clr in pH 4.5.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Crystal Structure of Light-Driven Chloride Pump Clr in pH 4.5. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1268

b:42.1
occ:1.00
H A:LYS46 2.4 33.6 1.0
HB2 A:LYS46 2.6 46.5 1.0
HD2 A:PRO45 2.7 33.9 1.0
HB2 A:ALA44 2.9 31.7 1.0
N A:LYS46 3.1 28.0 1.0
HB3 A:LYS46 3.2 46.5 1.0
CB A:LYS46 3.2 38.8 1.0
HB2 A:PRO45 3.4 40.0 1.0
HE2 A:LYS46 3.4 58.2 1.0
CD A:PRO45 3.5 28.2 1.0
N A:PRO45 3.7 31.6 1.0
CA A:LYS46 3.7 32.1 1.0
CB A:ALA44 3.7 26.4 1.0
HB1 A:ALA44 3.8 31.7 1.0
HG2 A:PRO45 3.9 34.1 1.0
CB A:PRO45 4.0 33.3 1.0
CG A:PRO45 4.0 28.4 1.0
C A:PRO45 4.0 31.3 1.0
HA A:LYS46 4.1 38.5 1.0
CA A:PRO45 4.2 34.5 1.0
C A:ALA44 4.2 28.6 1.0
HD3 A:PRO45 4.2 33.9 1.0
CE A:LYS46 4.3 48.5 1.0
HD3 A:LYS46 4.3 57.1 1.0
HB3 A:ALA44 4.4 31.7 1.0
CG A:LYS46 4.5 44.7 1.0
CA A:ALA44 4.5 24.9 1.0
CD A:LYS46 4.6 47.6 1.0
HE3 A:LYS46 4.7 58.2 1.0
HA A:ALA44 4.8 29.9 1.0
O A:ALA44 4.8 26.1 1.0
H A:TYR47 4.9 28.1 1.0
HB3 A:PRO45 4.9 40.0 1.0
HG3 A:PRO45 5.0 34.1 1.0
HG3 A:LYS46 5.0 53.7 1.0

Chlorine binding site 3 out of 3 in 5fjg

Go back to Chlorine Binding Sites List in 5fjg
Chlorine binding site 3 out of 3 in the The Crystal Structure of Light-Driven Chloride Pump Clr in pH 4.5.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of The Crystal Structure of Light-Driven Chloride Pump Clr in pH 4.5. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1277

b:44.5
occ:1.00
HG A:SER188 4.4 35.9 1.0
HB2 A:SER188 4.4 31.8 1.0
HB3 A:SER188 4.5 31.8 1.0
O A:HOH2080 4.8 34.3 1.0
CB A:SER188 4.9 26.5 1.0

Reference:

K.L.Kim, S.K.Kwon, S.H.Jun, J.S.Cha, H.Y.Kim, J.H.Kim, H.S.Cho. The Crystal Structure of Light-Driven Chloride Pump Clr in pH 4.5. To Be Published.
Page generated: Sat Dec 12 11:44:50 2020

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