Chlorine in PDB 5fjl: Crystal Structure of Raptor Adenovirus 1 Fibre Head, Wild-Type Form

The structure of Crystal Structure of Raptor Adenovirus 1 Fibre Head, Wild-Type Form, PDB code: 5fjl was solved by T.H.Nguyen, M.J.Van Raaij, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.00 / 1.47
Space group	P 21 3
Cell size a, b, c (Å), α, β, γ (°)	81.720, 81.720, 81.720, 90.00, 90.00, 90.00
R / Rfree (%)	15.7 / 17.9

The binding sites of Chlorine atom in the Crystal Structure of Raptor Adenovirus 1 Fibre Head, Wild-Type Form (pdb code 5fjl). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Raptor Adenovirus 1 Fibre Head, Wild-Type Form, PDB code: 5fjl:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the Crystal Structure of Raptor Adenovirus 1 Fibre Head, Wild-Type Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Raptor Adenovirus 1 Fibre Head, Wild-Type Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1463 b:25.9 occ:1.00 O A:HOH2173 2.9 33.4 1.0 N A:LEU391 3.1 16.2 1.0 O A:SER383 3.2 23.5 1.0 N A:SER383 3.2 20.1 1.0 NZ A:LYS387 3.3 32.0 1.0 CE A:LYS387 3.5 31.2 1.0 O A:LEU391 3.7 17.4 1.0 N A:LYS382 3.7 17.7 1.0 CA A:LEU390 3.8 16.0 1.0 CB A:LYS382 3.9 22.5 1.0 CB A:SER383 3.9 25.5 1.0 C A:LEU390 3.9 15.7 1.0 CA A:SER383 3.9 22.8 1.0 O A:HOH2094 3.9 41.8 1.0 CA A:LEU391 4.0 16.2 0.5 CA A:LEU391 4.0 16.1 0.5 C A:SER383 4.0 23.2 1.0 CB A:LEU391 4.0 17.8 0.5 CA A:LYS382 4.1 20.0 1.0 CB A:LEU391 4.1 17.8 0.5 C A:LYS382 4.1 20.8 1.0 CB A:PHE381 4.2 16.6 1.0 C A:LEU391 4.3 16.7 1.0 CD2 A:LEU390 4.3 19.1 1.0 CB A:LEU390 4.4 15.9 1.0 O A:GLU389 4.5 19.1 1.0 CG A:LEU391 4.5 19.8 0.5 C A:PHE381 4.6 18.8 1.0 CD2 A:PHE381 4.6 17.0 1.0 CD2 A:LEU391 4.6 20.0 0.5 O A:HOH2085 4.7 57.9 1.0 OG A:SER383 4.8 29.2 1.0 CA A:PHE381 4.8 16.9 1.0 CG A:PHE381 4.9 16.2 1.0 N A:LEU390 4.9 16.1 1.0 CG A:LYS382 4.9 27.5 1.0 CG A:LEU391 5.0 19.0 0.5

Chlorine binding site 2 out of 4 in the Crystal Structure of Raptor Adenovirus 1 Fibre Head, Wild-Type Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Raptor Adenovirus 1 Fibre Head, Wild-Type Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1464 b:20.4 occ:0.50 O A:HOH2164 2.9 11.2 0.5 N A:THR406 3.1 14.0 1.0 OG1 A:THR406 3.3 15.9 1.0 CB A:HIS457 3.5 14.3 1.0 CA A:SER405 3.6 14.1 1.0 CG A:HIS457 3.7 14.9 1.0 CD2 A:HIS457 3.7 16.0 1.0 CB A:THR406 3.8 14.9 1.0 C A:SER405 3.8 14.9 1.0 CB A:SER405 4.0 15.1 1.0 CA A:THR406 4.0 14.2 1.0 OG A:SER405 4.1 17.5 1.0 O A:PRO404 4.5 14.9 1.0 ND1 A:HIS457 4.7 15.1 1.0 NE2 A:HIS457 4.7 15.7 1.0 CE A:MET423 4.8 19.4 1.0 O A:THR406 4.8 14.4 1.0 N A:SER405 4.8 14.4 1.0 C A:THR406 4.9 14.2 1.0 CA A:HIS457 5.0 14.1 1.0

Chlorine binding site 3 out of 4 in the Crystal Structure of Raptor Adenovirus 1 Fibre Head, Wild-Type Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Raptor Adenovirus 1 Fibre Head, Wild-Type Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1465 b:30.3 occ:1.00 O A:HOH2169 3.0 50.7 1.0 NZ A:LYS337 3.1 24.5 1.0 O A:HOH2084 3.1 41.5 1.0 CE A:LYS337 3.7 23.4 1.0 CD A:LYS337 3.9 24.5 1.0 CA A:LYS382 3.9 20.0 1.0 CG A:PRO393 3.9 18.5 1.0 CG A:LYS382 4.0 27.5 1.0 CB A:LYS382 4.2 22.5 1.0 O A:HOH2030 4.3 44.6 1.0 O A:LYS382 4.5 22.6 1.0 O A:HOH2032 4.7 51.9 1.0 C A:LYS382 4.7 20.8 1.0 CD A:PRO393 4.7 16.5 1.0 N A:LYS382 4.8 17.7 1.0 CB A:PRO393 4.8 16.5 1.0 NZ A:LYS382 4.8 40.6 1.0 O A:PHE381 4.8 19.4 1.0 CD A:LYS382 4.9 32.2 1.0

Chlorine binding site 4 out of 4 in the Crystal Structure of Raptor Adenovirus 1 Fibre Head, Wild-Type Form


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Raptor Adenovirus 1 Fibre Head, Wild-Type Form within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1466 b:31.0 occ:1.00 O A:HOH2115 3.1 22.2 1.0 N A:THR447 3.2 20.9 1.0 O A:HOH2114 3.2 23.4 1.0 O A:HOH2116 3.5 40.6 1.0 CA A:GLU446 3.7 21.7 1.0 CB A:GLU446 3.9 21.5 1.0 C A:GLU446 4.0 21.4 1.0 CB A:THR447 4.0 21.4 1.0 OG1 A:THR447 4.1 24.5 1.0 CA A:THR447 4.2 20.7 1.0 CG A:GLU446 4.3 22.9 1.0 O A:THR447 4.5 19.5 1.0 OG1 A:THR414 4.6 23.6 1.0 CB A:THR414 4.7 19.9 1.0 O A:HOH2118 4.8 51.5 1.0 C A:THR447 4.8 19.8 1.0 O A:HIS445 4.9 26.5 1.0 O A:HOH2153 4.9 52.3 1.0 N A:THR414 4.9 17.6 1.0 N A:GLU446 5.0 23.9 1.0

T.H.Nguyen, M.Z.Ballmann, H.T.Do, H.N.Truong, M.Benko, B.Harrach, M.J.Van Raaij. Crystal Structure of Raptor Adenovirus 1 Fibre Head and Role of the Beta-Hairpin in Siadenovirus Fibre Head Domains Virol.J. V. 13 106 2016.
ISSN: ISSN 1743-422X
PubMed: 27334597
DOI: 10.1186/S12985-016-0558-7