Chlorine in PDB 5fkn: Tetr(D) T103A Mutant in Complex with Anhydrotetracycline and Magnesium, P4(3)2(1)2

The structure of Tetr(D) T103A Mutant in Complex with Anhydrotetracycline and Magnesium, P4(3)2(1)2, PDB code: 5fkn was solved by S.Werten, J.Schneider, G.J.Palm, W.Hinrichs, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	63.55 / 1.80
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	67.950, 67.950, 179.450, 90.00, 90.00, 90.00
R / Rfree (%)	22.4 / 25.5

The structure of Tetr(D) T103A Mutant in Complex with Anhydrotetracycline and Magnesium, P4(3)2(1)2 also contains other interesting chemical elements:

Magnesium

(Mg)

2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Chlorine atom in the Tetr(D) T103A Mutant in Complex with Anhydrotetracycline and Magnesium, P4(3)2(1)2 (pdb code 5fkn). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 11 binding sites of Chlorine where determined in the Tetr(D) T103A Mutant in Complex with Anhydrotetracycline and Magnesium, P4(3)2(1)2, PDB code: 5fkn:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 11 in the Tetr(D) T103A Mutant in Complex with Anhydrotetracycline and Magnesium, P4(3)2(1)2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Tetr(D) T103A Mutant in Complex with Anhydrotetracycline and Magnesium, P4(3)2(1)2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1211 b:56.5 occ:1.00 NH2 A:ARG62 3.3 24.9 1.0 CA A:GLU7 3.5 24.8 1.0 CB A:GLU7 3.5 28.3 1.0 CG A:GLU7 3.5 31.7 1.0 CZ A:ARG62 4.2 25.6 1.0 NE A:ARG62 4.2 26.2 1.0 N A:GLU7 4.2 23.6 1.0 OE1 A:GLU58 4.3 29.4 1.0 CD A:GLU7 4.4 34.5 1.0 C A:GLU7 4.5 23.6 1.0 O A:GLU7 4.5 22.2 1.0 CD A:GLU58 4.6 27.9 1.0 CG1 A:ILE10 4.8 23.7 1.0 CB A:ILE10 4.8 22.5 1.0 C A:ARG6 4.8 23.9 1.0 O A:ARG6 4.9 21.3 1.0 OE2 A:GLU7 4.9 35.7 1.0

Chlorine binding site 2 out of 11 in the Tetr(D) T103A Mutant in Complex with Anhydrotetracycline and Magnesium, P4(3)2(1)2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Tetr(D) T103A Mutant in Complex with Anhydrotetracycline and Magnesium, P4(3)2(1)2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1212 b:36.0 occ:1.00 OG A:SER74 3.1 20.9 1.0 N A:SER74 3.3 21.1 1.0 CB A:SER74 3.7 20.6 1.0 CB A:SER77 3.7 19.5 1.0 CA A:SER74 4.1 20.2 1.0 CA A:GLU73 4.2 22.4 1.0 CG A:GLU73 4.2 22.0 1.0 C A:GLU73 4.2 21.6 1.0 OG A:SER77 4.2 19.6 1.0 CB A:GLU73 4.7 22.3 1.0 O A:GLY72 4.8 24.2 1.0

Chlorine binding site 3 out of 11 in the Tetr(D) T103A Mutant in Complex with Anhydrotetracycline and Magnesium, P4(3)2(1)2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Tetr(D) T103A Mutant in Complex with Anhydrotetracycline and Magnesium, P4(3)2(1)2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1213 b:27.8 occ:1.00 N A:LEU4 3.1 23.9 1.0 NH1 A:ARG3 3.4 37.1 1.0 CA A:LEU4 3.9 23.5 1.0 CB A:LEU4 3.9 22.6 1.0 C A:ARG3 4.0 26.2 1.0 CA A:ARG3 4.0 28.5 1.0 C A:LEU4 4.2 24.4 1.0 CD A:ARG3 4.3 33.5 1.0 N A:ASN5 4.3 25.3 1.0 CG A:ARG3 4.3 32.9 1.0 CG A:LEU4 4.4 22.2 1.0 CZ A:ARG3 4.5 37.0 1.0 O A:SER2 4.7 26.8 1.0 CB A:ARG3 4.7 30.0 1.0 O A:LEU4 4.8 26.3 1.0 NE A:ARG3 4.9 35.7 1.0

Chlorine binding site 4 out of 11 in the Tetr(D) T103A Mutant in Complex with Anhydrotetracycline and Magnesium, P4(3)2(1)2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Tetr(D) T103A Mutant in Complex with Anhydrotetracycline and Magnesium, P4(3)2(1)2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1214 b:39.9 occ:1.00 N A:GLU7 3.0 23.6 1.0 O A:HOH2005 3.2 44.6 1.0 ND2 A:ASN5 3.2 31.2 1.0 CB A:GLU7 3.5 28.3 1.0 N A:ARG6 3.6 24.1 1.0 CB A:ASN5 3.7 27.5 1.0 CA A:GLU7 3.9 24.8 1.0 CB A:ARG6 3.9 26.2 1.0 CG A:ASN5 3.9 29.6 1.0 C A:ARG6 4.0 23.9 1.0 CA A:ARG6 4.0 24.1 1.0 C A:ASN5 4.1 24.2 1.0 O A:HOH2006 4.3 32.6 1.0 CA A:ASN5 4.5 25.6 1.0 O A:ASN5 4.8 22.1 1.0 O A:HOH2004 4.8 44.7 1.0 OE1 A:GLU7 4.9 38.7 1.0 CG A:ARG6 4.9 28.4 1.0 CG A:GLU7 4.9 31.7 1.0

Chlorine binding site 5 out of 11 in the Tetr(D) T103A Mutant in Complex with Anhydrotetracycline and Magnesium, P4(3)2(1)2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Tetr(D) T103A Mutant in Complex with Anhydrotetracycline and Magnesium, P4(3)2(1)2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1215 b:47.5 occ:1.00 N A:THR27 2.9 27.6 1.0 O A:HOH2025 3.0 32.1 1.0 OG1 A:THR27 3.3 28.1 1.0 CA A:THR26 3.4 29.6 1.0 O A:HOH2041 3.4 34.5 1.0 CB A:THR26 3.6 30.5 1.0 C A:THR26 3.6 27.9 1.0 CB A:THR27 3.9 27.3 1.0 CG2 A:THR27 4.0 27.2 1.0 CA A:THR27 4.0 27.1 1.0 CB A:LYS48 4.0 26.6 1.0 CG2 A:THR26 4.1 32.0 1.0 O A:HOH2026 4.2 41.9 1.0 CD A:LYS48 4.3 27.8 1.0 CG A:LYS48 4.5 26.4 1.0 N A:ARG28 4.7 30.5 1.0 O A:LEU25 4.7 34.7 1.0 N A:THR26 4.8 30.0 1.0 OG1 A:THR26 4.8 30.4 1.0 N A:LYS48 4.9 26.7 1.0 CA A:LYS48 4.9 25.9 1.0 O A:THR26 4.9 26.6 1.0 C A:THR27 4.9 28.1 1.0

Chlorine binding site 6 out of 11 in the Tetr(D) T103A Mutant in Complex with Anhydrotetracycline and Magnesium, P4(3)2(1)2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Tetr(D) T103A Mutant in Complex with Anhydrotetracycline and Magnesium, P4(3)2(1)2 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1216 b:57.7 occ:1.00 NE A:ARG88 3.4 35.1 1.0 CD A:ARG88 4.0 32.2 1.0 CZ A:ARG88 4.0 35.7 1.0 NH2 A:ARG88 4.1 37.7 1.0 NH1 A:ARG88 4.9 35.6 1.0

Chlorine binding site 7 out of 11 in the Tetr(D) T103A Mutant in Complex with Anhydrotetracycline and Magnesium, P4(3)2(1)2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Tetr(D) T103A Mutant in Complex with Anhydrotetracycline and Magnesium, P4(3)2(1)2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl1211 b:60.4 occ:1.00 OE1 B:GLU58 3.3 36.4 1.0 NH2 B:ARG62 3.4 28.3 1.0 CA B:GLU7 3.6 25.7 1.0 CD B:GLU58 3.7 33.0 1.0 CB B:GLU7 3.8 28.1 1.0 CG B:GLU7 3.8 30.8 1.0 CD1 B:ILE10 4.1 28.9 1.0 OE2 B:GLU58 4.2 37.8 1.0 N B:GLU7 4.3 24.4 1.0 CZ B:ARG62 4.3 28.9 1.0 NE B:ARG62 4.3 29.4 1.0 CG B:GLU58 4.4 30.4 1.0 C B:GLU7 4.7 23.8 1.0 NE B:ARG6 4.7 38.3 1.0 O B:GLU7 4.7 22.5 1.0 C B:ARG6 4.7 24.7 1.0 O B:ARG6 4.7 22.7 1.0 CB B:ILE10 4.7 24.7 1.0 CG B:ARG6 4.8 32.3 1.0 CD B:GLU7 4.9 33.8 1.0 CG2 B:ILE10 4.9 24.3 1.0 CG1 B:ILE10 5.0 26.4 1.0

Chlorine binding site 8 out of 11 in the Tetr(D) T103A Mutant in Complex with Anhydrotetracycline and Magnesium, P4(3)2(1)2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Tetr(D) T103A Mutant in Complex with Anhydrotetracycline and Magnesium, P4(3)2(1)2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl1212 b:36.9 occ:1.00 OG B:SER74 3.1 22.1 1.0 N B:SER74 3.3 21.8 1.0 CB B:SER74 3.5 22.1 1.0 CB B:SER77 3.8 22.0 1.0 CA B:SER74 4.0 22.4 1.0 CG B:GLU73 4.2 23.8 1.0 CA B:GLU73 4.2 24.3 1.0 C B:GLU73 4.2 23.6 1.0 OG B:SER77 4.2 21.9 1.0 O B:GLY72 4.8 26.6 1.0 CB B:GLU73 4.8 24.2 1.0

Chlorine binding site 9 out of 11 in the Tetr(D) T103A Mutant in Complex with Anhydrotetracycline and Magnesium, P4(3)2(1)2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Tetr(D) T103A Mutant in Complex with Anhydrotetracycline and Magnesium, P4(3)2(1)2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl1213 b:28.0 occ:1.00 N B:LEU4 3.1 25.7 1.0 NH1 B:ARG3 3.1 31.0 0.5 CD B:ARG3 3.8 32.2 0.5 CA B:LEU4 3.9 25.5 1.0 CB B:LEU4 4.0 23.8 1.0 CA B:ARG3 4.0 29.6 0.5 C B:ARG3 4.1 27.7 1.0 CA B:ARG3 4.1 29.5 0.5 CG B:ARG3 4.2 31.7 0.5 C B:LEU4 4.2 26.2 1.0 CZ B:ARG3 4.2 32.9 0.5 N B:ASN5 4.3 27.0 1.0 CG B:LEU4 4.4 24.3 1.0 NE B:ARG3 4.5 32.7 0.5 CD B:ARG3 4.5 31.9 0.5 CG B:ARG3 4.5 31.5 0.5 CB B:ARG3 4.6 31.4 0.5 O B:SER2 4.7 27.6 1.0 NE B:ARG3 4.7 31.9 0.5 O B:LEU4 4.8 26.9 1.0 CB B:ARG3 4.9 31.2 0.5

Chlorine binding site 10 out of 11 in the Tetr(D) T103A Mutant in Complex with Anhydrotetracycline and Magnesium, P4(3)2(1)2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Tetr(D) T103A Mutant in Complex with Anhydrotetracycline and Magnesium, P4(3)2(1)2 within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl1214 b:42.0 occ:1.00 O B:HOH2003 3.0 47.0 1.0 N B:GLU7 3.2 24.4 1.0 ND2 B:ASN5 3.2 34.3 1.0 CB B:GLU7 3.6 28.1 1.0 N B:ARG6 3.7 26.3 1.0 CB B:ASN5 3.8 30.2 1.0 CB B:ARG6 3.9 28.8 1.0 CG B:ASN5 3.9 31.4 1.0 CA B:GLU7 4.0 25.7 1.0 CA B:ARG6 4.1 25.9 1.0 C B:ARG6 4.1 24.7 1.0 O B:HOH2004 4.1 31.8 1.0 C B:ASN5 4.3 26.6 1.0 CA B:ASN5 4.6 28.1 1.0 OE1 B:GLU7 4.6 35.7 1.0 CG B:ARG6 4.9 32.3 1.0 CG B:GLU7 5.0 30.8 1.0

S.Werten, J.Schneider, G.J.Palm, W.Hinrichs. Modular Organisation of Inducer Recognition and Allostery in the Tetracycline Repressor Febs J. V. 283 2102 2016.
ISSN: ISSN 1742-464X
PubMed: 27028290
DOI: 10.1111/FEBS.13723