Chlorine in PDB 5fly: The Fhud Protein From S.Pseudintermedius

The structure of The Fhud Protein From S.Pseudintermedius, PDB code: 5fly was solved by E.Malito, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.02 / 1.60
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	43.582, 53.822, 120.248, 90.00, 99.17, 90.00
R / Rfree (%)	18.4 / 21.7

The structure of The Fhud Protein From S.Pseudintermedius also contains other interesting chemical elements:

Cadmium

(Cd)

9 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Chlorine atom in the The Fhud Protein From S.Pseudintermedius (pdb code 5fly). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 16 binding sites of Chlorine where determined in the The Fhud Protein From S.Pseudintermedius, PDB code: 5fly:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 16 in the The Fhud Protein From S.Pseudintermedius


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Fhud Protein From S.Pseudintermedius within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1287 b:16.0 occ:1.00 CD A:CD1285 2.5 10.7 1.0 HE2 A:LYS208 3.1 17.6 1.0 OE2 A:GLU209 3.6 11.9 1.0 CL A:CL1288 3.9 12.6 1.0 CE A:LYS208 4.0 14.7 1.0 HZ2 A:LYS208 4.3 20.3 1.0 HE3 A:LYS208 4.4 17.6 1.0 HZ1 A:LYS208 4.5 20.3 1.0 NZ A:LYS208 4.5 16.9 1.0 HG2 A:LYS208 4.6 12.1 1.0 CD A:GLU209 4.6 11.5 1.0 OE1 A:GLU209 4.7 10.6 1.0 O A:HOH2353 4.9 29.8 1.0

Chlorine binding site 2 out of 16 in the The Fhud Protein From S.Pseudintermedius


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Fhud Protein From S.Pseudintermedius within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1288 b:12.6 occ:0.98 H A:LYS208 2.5 12.1 1.0 CD A:CD1285 2.6 10.7 1.0 HG2 A:LYS208 2.8 12.1 1.0 O A:HOH2138 3.1 23.3 1.0 HA A:PRO207 3.3 13.2 1.0 N A:LYS208 3.4 10.1 1.0 OE1 A:GLU209 3.6 10.6 1.0 HB3 A:PRO207 3.6 12.6 1.0 CG A:LYS208 3.7 10.1 1.0 HB3 A:LYS208 3.8 11.3 1.0 HE2 A:LYS208 3.8 17.6 1.0 CL A:CL1287 3.9 16.0 1.0 HD3 A:LYS208 3.9 14.2 1.0 CA A:PRO207 4.0 11.0 1.0 CB A:LYS208 4.1 9.4 1.0 OE2 A:GLU209 4.1 11.9 1.0 C A:PRO207 4.1 10.1 1.0 CD A:LYS208 4.2 11.8 1.0 CD A:GLU209 4.2 11.5 1.0 H A:GLU209 4.3 11.6 1.0 CB A:PRO207 4.3 10.5 1.0 CA A:LYS208 4.3 9.6 1.0 O A:HOH2309 4.4 27.6 1.0 HG3 A:LYS208 4.4 12.1 1.0 CE A:LYS208 4.5 14.7 1.0 HB2 A:PRO207 4.7 12.6 1.0 O A:HOH2353 4.8 29.8 1.0 N A:GLU209 5.0 9.6 1.0 O A:HOH2311 5.0 13.0 1.0 HE3 A:LYS208 5.0 17.6 1.0

Chlorine binding site 3 out of 16 in the The Fhud Protein From S.Pseudintermedius


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of The Fhud Protein From S.Pseudintermedius within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1289 b:29.3 occ:0.92 H A:GLU4 2.2 22.1 1.0 CD A:CD1283 2.6 10.0 0.5 HD2 A:LYS3 2.7 34.0 1.0 HA A:LYS3 2.8 26.7 1.0 CG A:GLU4 2.9 34.9 1.0 N A:GLU4 3.1 18.4 1.0 HB3 A:LYS3 3.3 25.7 1.0 CA A:LYS3 3.5 22.3 1.0 CD A:LYS3 3.6 28.4 1.0 O A:HOH2006 3.6 27.4 1.0 HD3 A:LYS3 3.7 34.0 1.0 CB A:LYS3 3.8 21.4 1.0 C A:LYS3 3.8 21.2 1.0 OD1 B:ASP136 3.8 16.9 1.0 CL A:CL1294 3.9 31.3 1.0 CB A:GLU4 3.9 17.1 1.0 CA A:GLU4 4.1 18.3 1.0 CD A:GLU4 4.1 36.6 1.0 O B:HOH2189 4.2 26.4 1.0 CG A:LYS3 4.3 24.0 1.0 OE2 A:GLU4 4.3 36.6 1.0 O A:HOH2004 4.3 16.4 1.0 HE3 A:LYS3 4.6 37.3 1.0 HA A:GLU4 4.6 22.0 1.0 O A:HOH2028 4.7 20.3 1.0 CE A:LYS3 4.7 31.1 1.0 HB2 A:LYS3 4.7 25.7 1.0 HG3 A:LYS3 4.7 28.8 1.0 CG B:ASP136 4.7 16.0 1.0 N A:LYS3 4.8 24.4 1.0 OD2 B:ASP136 4.8 16.9 1.0 HE2 A:LYS3 4.9 37.3 1.0

Chlorine binding site 4 out of 16 in the The Fhud Protein From S.Pseudintermedius


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of The Fhud Protein From S.Pseudintermedius within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1290 b:41.0 occ:1.00 HH A:TYR214 2.5 24.7 1.0 CD A:CD1282 2.9 9.8 0.6 HD2 A:PRO207 3.2 12.4 1.0 OH A:TYR214 3.2 20.6 1.0 HD3 A:PRO207 3.3 12.4 1.0 CD A:PRO207 3.6 10.3 1.0 O A:HOH2422 3.7 24.9 1.0 OE2 A:GLU210 3.7 14.9 1.0 HE2 A:TYR214 3.7 22.0 1.0 HG2 A:PRO207 3.9 13.4 1.0 OE1 A:GLU210 3.9 19.0 1.0 CD A:GLU210 4.0 16.0 1.0 CZ A:TYR214 4.1 18.7 1.0 HA A:VAL206 4.2 9.6 1.0 CE2 A:TYR214 4.2 18.3 1.0 CG A:PRO207 4.3 11.2 1.0 O A:GLU205 4.4 9.5 1.0 HG3 A:PRO207 4.7 13.4 1.0 HB2 A:GLU210 4.7 12.2 1.0 HB3 A:GLU210 4.8 12.2 1.0 HG1 A:THR204 4.9 15.0 1.0 N A:PRO207 4.9 9.4 1.0 HG11 A:VAL206 5.0 13.6 1.0 HB2 A:ALA197 5.0 10.4 1.0

Chlorine binding site 5 out of 16 in the The Fhud Protein From S.Pseudintermedius


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of The Fhud Protein From S.Pseudintermedius within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1291 b:20.9 occ:1.00 CD A:CD1282 2.6 9.8 0.6 HZ1 A:LYS213 3.4 24.0 1.0 OE1 A:GLU210 3.4 19.0 1.0 HZ2 A:LYS213 3.4 24.0 1.0 O A:HOH2422 3.5 24.9 1.0 OE2 A:GLU210 3.5 14.9 1.0 CD A:GLU210 3.7 16.0 1.0 NZ A:LYS213 3.8 20.0 1.0 HZ3 A:LYS213 4.1 24.0 1.0 HG2 A:GLU210 4.9 14.8 1.0 CG A:GLU210 5.0 12.3 1.0

Chlorine binding site 6 out of 16 in the The Fhud Protein From S.Pseudintermedius


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of The Fhud Protein From S.Pseudintermedius within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1292 b:23.4 occ:1.00 OD2 A:ASP20 2.6 26.4 1.0 CD A:CD1286 2.8 16.8 0.4 CG A:ASP20 3.2 23.6 1.0 OD1 A:ASP20 3.6 22.1 1.0 O A:HOH2025 4.1 26.9 1.0 HB3 A:ASP20 4.2 18.5 1.0 O A:HOH2045 4.2 41.0 1.0 CB A:ASP20 4.3 15.4 1.0 O A:HOH2012 4.3 34.5 1.0 O A:HOH2010 4.3 20.6 1.0 HB2 A:ASP20 4.5 18.5 1.0 OG1 A:THR5 4.6 20.7 1.0 HG1 A:THR5 5.0 24.8 1.0

Chlorine binding site 7 out of 16 in the The Fhud Protein From S.Pseudintermedius


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of The Fhud Protein From S.Pseudintermedius within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1293 b:49.0 occ:1.00 O A:HOH2045 2.2 41.0 1.0 HB3 A:LYS18 2.7 20.1 1.0 HD3 A:LYS18 2.7 27.2 1.0 CD A:CD1286 2.8 16.8 0.4 HB2 A:LYS18 3.1 20.1 1.0 CB A:LYS18 3.3 16.8 1.0 CD A:LYS18 3.6 22.6 1.0 HB3 A:ALA7 3.7 19.1 1.0 HD2 A:LYS18 3.8 27.2 1.0 OD1 A:ASP20 3.8 22.1 1.0 HB2 A:ALA7 4.0 19.1 1.0 OD2 A:ASP20 4.1 26.4 1.0 CG A:LYS18 4.1 20.2 1.0 CG A:ASP20 4.3 23.6 1.0 CB A:ALA7 4.3 15.9 1.0 O A:LYS18 4.4 16.3 1.0 C A:LYS18 4.5 14.6 1.0 CA A:LYS18 4.5 14.3 1.0 HG2 A:LYS18 4.7 24.2 1.0 HG3 A:LYS18 4.7 24.2 1.0 CE A:LYS18 4.8 23.7 1.0 HE2 A:LYS18 4.9 28.4 1.0 HE3 A:LYS18 4.9 28.4 1.0 HB1 A:ALA7 5.0 19.1 1.0

Chlorine binding site 8 out of 16 in the The Fhud Protein From S.Pseudintermedius


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of The Fhud Protein From S.Pseudintermedius within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1294 b:31.3 occ:1.00 HE3 A:LYS23 2.6 35.6 1.0 CD A:CD1283 2.7 10.0 0.5 O A:HOH2004 2.7 16.4 1.0 HZ2 A:LYS23 3.0 38.9 1.0 HB3 A:LYS23 3.1 19.0 1.0 HZ3 A:LYS23 3.1 38.9 1.0 HB3 A:ASP24 3.2 20.0 1.0 NZ A:LYS23 3.3 32.4 1.0 CE A:LYS23 3.4 29.7 1.0 CG A:GLU4 3.4 34.9 1.0 OD1 B:ASP136 3.5 16.9 1.0 OD2 B:ASP136 3.6 16.9 1.0 H A:ASP24 3.6 16.3 1.0 HB2 A:ASP24 3.7 20.0 1.0 CG B:ASP136 3.7 16.0 1.0 CL A:CL1289 3.9 29.3 0.9 CB A:GLU4 3.9 17.1 1.0 CB A:ASP24 3.9 16.7 1.0 HE2 A:LYS23 3.9 35.6 1.0 CB A:LYS23 4.0 15.8 1.0 N A:ASP24 4.1 13.6 1.0 CD A:GLU4 4.1 36.6 1.0 HG2 A:LYS23 4.2 24.1 1.0 OE2 A:GLU4 4.2 36.6 1.0 HZ1 A:LYS23 4.2 38.9 1.0 H A:GLU4 4.3 22.1 1.0 O A:HOH2054 4.3 12.9 1.0 CG A:LYS23 4.5 20.1 1.0 CD A:LYS23 4.5 25.2 1.0 HB2 A:LYS23 4.5 19.0 1.0 HB3 B:ASP136 4.6 16.1 1.0 CA A:ASP24 4.6 13.9 1.0 O A:HOH2052 4.7 24.4 1.0 HB3 A:LYS3 4.7 25.7 1.0 C A:LYS23 4.8 15.4 1.0 H A:LYS23 4.8 17.0 1.0 N A:GLU4 4.8 18.4 1.0 O A:HOH2028 4.8 20.3 1.0 CB B:ASP136 4.8 13.4 1.0 O A:GLU4 4.8 19.9 1.0 HD3 A:LYS23 4.9 30.3 1.0 CA A:GLU4 4.9 18.3 1.0 CA A:LYS23 4.9 15.5 1.0 O A:HOH2006 4.9 27.4 1.0

Chlorine binding site 9 out of 16 in the The Fhud Protein From S.Pseudintermedius


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of The Fhud Protein From S.Pseudintermedius within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl1286 b:19.1 occ:1.00 CD B:CD1283 2.5 11.4 1.0 HE2 B:LYS208 3.3 19.3 1.0 OE2 B:GLU209 3.6 13.7 1.0 CE B:LYS208 4.2 16.1 1.0 HZ1 B:LYS208 4.4 22.4 1.0 HZ2 B:LYS208 4.5 22.4 1.0 O B:HOH2273 4.5 31.1 1.0 O B:HOH2275 4.6 17.3 1.0 CD B:GLU209 4.6 13.9 1.0 NZ B:LYS208 4.6 18.6 1.0 HG2 B:LYS208 4.6 14.2 1.0 HD3 B:LYS208 4.7 16.2 1.0 OE1 B:GLU209 4.7 12.6 1.0 HE3 B:LYS208 4.8 19.3 1.0 CD B:LYS208 5.0 13.5 1.0

Chlorine binding site 10 out of 16 in the The Fhud Protein From S.Pseudintermedius


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of The Fhud Protein From S.Pseudintermedius within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl1287 b:14.4 occ:1.00 HB3 B:ALA13 2.7 18.7 1.0 O B:HOH2163 3.0 30.7 1.0 CB B:ALA13 3.6 15.6 1.0 OD2 B:ASP107 3.7 10.9 1.0 HB2 B:ALA13 3.7 18.7 1.0 HE2 B:LYS110 3.8 17.2 1.0 HB1 B:ALA13 4.0 18.7 1.0 HZ2 B:LYS110 4.4 20.4 1.0 HA B:ALA13 4.6 20.9 1.0 CE B:LYS110 4.6 14.3 1.0 CA B:ALA13 4.6 17.4 1.0 H B:ALA13 4.6 18.9 1.0 CG B:ASP107 4.7 10.2 1.0 O B:HOH2020 4.7 11.6 1.0 OD1 B:ASP107 4.8 9.9 1.0 HE3 B:LYS110 4.8 17.2 1.0 NZ B:LYS110 4.9 17.0 1.0 HZ1 B:LYS110 4.9 20.4 1.0

F.Abate, R.Cozzi, M.Maritan, P.Lo Surdo, D.Maione, E.Malito, M.J.Bottomley. Crystal Structure of Fhud at 1.6 Angstrom Resolution: A Ferrichrome-Binding Protein From the Animal and Human Pathogen Staphylococcus Pseudintermedius Acta Crystallogr.,Sect.F V. 72 214 2016.
ISSN: ESSN 1744-3091
PubMed: 26919525
DOI: 10.1107/S2053230X16002272