Chlorine in PDB 5foq: Acetylcholinesterase in Complex with C7653
Enzymatic activity of Acetylcholinesterase in Complex with C7653
All present enzymatic activity of Acetylcholinesterase in Complex with C7653:
3.1.1.7;
Protein crystallography data
The structure of Acetylcholinesterase in Complex with C7653, PDB code: 5foq
was solved by
L.Berg,
B.K.Mishra,
D.C.Andersson,
F.Ekstrom,
A.Linusson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
28.98 /
2.30
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
79.020,
111.770,
227.090,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
19.2 /
22.2
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Acetylcholinesterase in Complex with C7653
(pdb code 5foq). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Acetylcholinesterase in Complex with C7653, PDB code: 5foq:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 5foq
Go back to
Chlorine Binding Sites List in 5foq
Chlorine binding site 1 out
of 4 in the Acetylcholinesterase in Complex with C7653
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Acetylcholinesterase in Complex with C7653 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1543
b:76.9
occ:1.00
|
CL1
|
A:GC81543
|
0.0
|
76.9
|
1.0
|
C02
|
A:GC81543
|
1.7
|
62.9
|
1.0
|
C03
|
A:GC81543
|
2.7
|
56.3
|
1.0
|
C26
|
A:GC81543
|
2.7
|
63.9
|
1.0
|
OH
|
A:TYR72
|
3.8
|
60.2
|
1.0
|
C04
|
A:GC81543
|
4.0
|
52.8
|
1.0
|
C24
|
A:GC81543
|
4.0
|
62.2
|
1.0
|
CD1
|
A:TRP286
|
4.2
|
45.6
|
1.0
|
O
|
A:HOH2039
|
4.2
|
48.4
|
1.0
|
CG
|
A:TRP286
|
4.3
|
48.5
|
1.0
|
CB
|
A:TRP286
|
4.5
|
38.6
|
1.0
|
CZ
|
A:TYR72
|
4.5
|
49.7
|
1.0
|
C05
|
A:GC81543
|
4.5
|
55.7
|
1.0
|
NE1
|
A:TRP286
|
4.7
|
45.9
|
1.0
|
CD2
|
A:TRP286
|
4.8
|
46.8
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 5foq
Go back to
Chlorine Binding Sites List in 5foq
Chlorine binding site 2 out
of 4 in the Acetylcholinesterase in Complex with C7653
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Acetylcholinesterase in Complex with C7653 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1543
b:80.7
occ:1.00
|
CL2
|
A:GC81543
|
0.0
|
80.7
|
1.0
|
C24
|
A:GC81543
|
1.7
|
62.2
|
1.0
|
C26
|
A:GC81543
|
2.7
|
63.9
|
1.0
|
C05
|
A:GC81543
|
2.7
|
55.7
|
1.0
|
O06
|
A:GC81543
|
3.0
|
55.9
|
1.0
|
CE2
|
A:TYR72
|
3.5
|
49.7
|
1.0
|
OD1
|
A:ASP74
|
3.7
|
65.5
|
1.0
|
CG
|
A:ASP74
|
3.9
|
61.8
|
1.0
|
CA
|
A:ASP74
|
3.9
|
44.6
|
1.0
|
CB
|
A:ASP74
|
3.9
|
48.4
|
1.0
|
CE2
|
A:TYR341
|
3.9
|
44.1
|
1.0
|
C02
|
A:GC81543
|
4.0
|
62.9
|
1.0
|
C04
|
A:GC81543
|
4.0
|
52.8
|
1.0
|
CD2
|
A:TYR72
|
4.1
|
44.6
|
1.0
|
CD2
|
A:TYR341
|
4.1
|
45.9
|
1.0
|
C07
|
A:GC81543
|
4.2
|
46.9
|
1.0
|
N10
|
A:GC81543
|
4.4
|
42.2
|
1.0
|
CZ
|
A:TYR72
|
4.5
|
49.7
|
1.0
|
OH
|
A:TYR124
|
4.5
|
35.1
|
1.0
|
C03
|
A:GC81543
|
4.5
|
56.3
|
1.0
|
OH
|
A:TYR72
|
4.6
|
60.2
|
1.0
|
OD2
|
A:ASP74
|
4.6
|
64.8
|
1.0
|
N
|
A:ASP74
|
4.7
|
47.9
|
1.0
|
CZ2
|
A:TRP286
|
4.7
|
41.7
|
1.0
|
O
|
A:HOH2039
|
4.7
|
48.4
|
1.0
|
N
|
A:THR75
|
4.8
|
47.3
|
1.0
|
C08
|
A:GC81543
|
4.8
|
41.4
|
1.0
|
C
|
A:ASP74
|
4.9
|
47.9
|
1.0
|
NE1
|
A:TRP286
|
5.0
|
45.9
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 5foq
Go back to
Chlorine Binding Sites List in 5foq
Chlorine binding site 3 out
of 4 in the Acetylcholinesterase in Complex with C7653
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Acetylcholinesterase in Complex with C7653 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl1544
b:0.1
occ:1.00
|
CL1
|
B:GC81544
|
0.0
|
0.1
|
1.0
|
C02
|
B:GC81544
|
1.7
|
97.0
|
1.0
|
C03
|
B:GC81544
|
2.7
|
96.2
|
1.0
|
C26
|
B:GC81544
|
2.7
|
96.3
|
1.0
|
C04
|
B:GC81544
|
4.0
|
94.1
|
1.0
|
C24
|
B:GC81544
|
4.0
|
93.5
|
1.0
|
OH
|
B:TYR72
|
4.1
|
65.3
|
1.0
|
CG
|
B:TRP286
|
4.2
|
58.9
|
1.0
|
CD1
|
B:TRP286
|
4.2
|
58.5
|
1.0
|
CB
|
B:TRP286
|
4.4
|
53.3
|
1.0
|
C05
|
B:GC81544
|
4.6
|
90.8
|
1.0
|
CZ
|
B:TYR72
|
4.8
|
57.9
|
1.0
|
NE1
|
B:TRP286
|
4.8
|
55.4
|
1.0
|
CD2
|
B:TRP286
|
4.8
|
57.0
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 5foq
Go back to
Chlorine Binding Sites List in 5foq
Chlorine binding site 4 out
of 4 in the Acetylcholinesterase in Complex with C7653
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Acetylcholinesterase in Complex with C7653 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl1544
b:0.1
occ:1.00
|
CL2
|
B:GC81544
|
0.0
|
0.1
|
1.0
|
C24
|
B:GC81544
|
1.7
|
93.5
|
1.0
|
C26
|
B:GC81544
|
2.7
|
96.3
|
1.0
|
C05
|
B:GC81544
|
2.7
|
90.8
|
1.0
|
O06
|
B:GC81544
|
3.1
|
84.4
|
1.0
|
OD2
|
B:ASP74
|
3.1
|
72.9
|
1.0
|
CE2
|
B:TYR72
|
3.3
|
49.1
|
1.0
|
CE1
|
B:TYR341
|
3.8
|
44.5
|
1.0
|
C07
|
B:GC81544
|
3.9
|
76.9
|
1.0
|
C02
|
B:GC81544
|
4.0
|
97.0
|
1.0
|
C04
|
B:GC81544
|
4.0
|
94.1
|
1.0
|
CG
|
B:ASP74
|
4.0
|
67.3
|
1.0
|
CD1
|
B:TYR341
|
4.0
|
46.2
|
1.0
|
OH
|
B:TYR72
|
4.1
|
65.3
|
1.0
|
CD2
|
B:TYR72
|
4.2
|
51.6
|
1.0
|
CZ
|
B:TYR72
|
4.2
|
57.9
|
1.0
|
N10
|
B:GC81544
|
4.2
|
43.3
|
1.0
|
CA
|
B:ASP74
|
4.4
|
52.4
|
1.0
|
CB
|
B:ASP74
|
4.4
|
58.0
|
1.0
|
OH
|
B:TYR124
|
4.5
|
46.0
|
1.0
|
C03
|
B:GC81544
|
4.5
|
96.2
|
1.0
|
C08
|
B:GC81544
|
4.6
|
50.6
|
1.0
|
CZ2
|
B:TRP286
|
4.7
|
43.3
|
1.0
|
NE1
|
B:TRP286
|
4.8
|
55.4
|
1.0
|
CE2
|
B:TRP286
|
4.9
|
49.6
|
1.0
|
CZ
|
B:TYR341
|
4.9
|
49.4
|
1.0
|
OD1
|
B:ASP74
|
4.9
|
63.9
|
1.0
|
|
Reference:
L.Berg,
B.K.Mishra,
C.D.Andersson,
F.Ekstrom,
A.Linusson.
The Nature of Activated Non-Classical Hydrogen Bonds: A Case Study on Acetylcholinesterase-Ligand Complexes. Chemistry V. 22 2672 2016.
ISSN: ISSN 0947-6539
PubMed: 26751405
DOI: 10.1002/CHEM.201503973
Page generated: Fri Jul 26 08:06:43 2024
|