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Chlorine in PDB 5fub: Crystal Structure of Zebrafish Protein Arginine Methyltransferase 2 Catalytic Domain with Sah

Enzymatic activity of Crystal Structure of Zebrafish Protein Arginine Methyltransferase 2 Catalytic Domain with Sah

All present enzymatic activity of Crystal Structure of Zebrafish Protein Arginine Methyltransferase 2 Catalytic Domain with Sah:
2.1.1.125;

Protein crystallography data

The structure of Crystal Structure of Zebrafish Protein Arginine Methyltransferase 2 Catalytic Domain with Sah, PDB code: 5fub was solved by V.Cura, N.Troffer-Charlier, N.Marechal, L.Bonnefond, J.Cavarelli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.41 / 2.00
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 147.070, 147.070, 127.390, 90.00, 90.00, 120.00
R / Rfree (%) 18.2 / 21.8

Other elements in 5fub:

The structure of Crystal Structure of Zebrafish Protein Arginine Methyltransferase 2 Catalytic Domain with Sah also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Zebrafish Protein Arginine Methyltransferase 2 Catalytic Domain with Sah (pdb code 5fub). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Zebrafish Protein Arginine Methyltransferase 2 Catalytic Domain with Sah, PDB code: 5fub:

Chlorine binding site 1 out of 1 in 5fub

Go back to Chlorine Binding Sites List in 5fub
Chlorine binding site 1 out of 1 in the Crystal Structure of Zebrafish Protein Arginine Methyltransferase 2 Catalytic Domain with Sah


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Zebrafish Protein Arginine Methyltransferase 2 Catalytic Domain with Sah within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1409

b:67.8
occ:1.00
O A:HOH2024 2.7 53.8 1.0
NE A:ARG104 3.5 42.1 1.0
CE1 A:PHE132 3.8 39.8 1.0
CD1 A:PHE132 3.9 41.1 1.0
NH2 A:ARG104 3.9 41.0 1.0
CZ A:ARG104 4.2 41.2 1.0
CD2 A:LEU136 4.2 51.0 1.0
CD1 A:LEU136 4.3 52.3 1.0
CG A:LEU136 4.4 50.6 1.0
CD A:ARG104 4.5 41.4 1.0
CZ A:PHE132 4.9 38.6 1.0

Reference:

V.Cura, N.Marechal, N.Troffer-Charlier, J.M.Strub, M.J.Van Haren, N.I.Martin, S.Cianferani, L.Bonnefond, J.Cavarelli. Structural Studies of Protein Arginine Methyltransferase 2 Reveal Its Interactions with Potential Substrates and Inhibitors. Febs J. V. 284 77 2017.
ISSN: ISSN 1742-4658
PubMed: 27879050
DOI: 10.1111/FEBS.13953
Page generated: Fri Jul 26 08:10:33 2024

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