Chlorine in PDB 5fys: Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with D-2-Hydroxyglutarate

The structure of Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with D-2-Hydroxyglutarate, PDB code: 5fys was solved by R.Nowak, J.Kopec, C.Johansson, C.Gileadi, K.Kupinska, C.Strain-Damerell, A.Szykowska, F.Von Delft, N.A.Burgess-Brown, C.H.Arrowsmith, C.Bountra, A.M.Edwards, U.Oppermann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.88 / 1.89
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	142.080, 142.080, 152.470, 90.00, 90.00, 120.00
R / Rfree (%)	19.3 / 22.1

The structure of Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with D-2-Hydroxyglutarate also contains other interesting chemical elements:

Manganese	(Mn)	2 atoms
Zinc	(Zn)	2 atoms

The binding sites of Chlorine atom in the Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with D-2-Hydroxyglutarate (pdb code 5fys). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with D-2-Hydroxyglutarate, PDB code: 5fys:

Chlorine binding site 1 out of 1 in the Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with D-2-Hydroxyglutarate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with D-2-Hydroxyglutarate within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1774 b:62.4 occ:1.00 O A:HOH2072 2.2 50.7 1.0 ND2 A:ASN91 2.6 40.3 1.0 O A:THR416 2.7 54.3 1.0 O A:LEU413 2.8 39.5 1.0 O A:GLU419 2.9 61.3 1.0 O A:HOH2074 3.2 48.0 1.0 O A:LEU90 3.3 38.3 1.0 O A:HOH2075 3.5 70.7 1.0 C A:THR416 3.7 60.8 1.0 O A:VAL414 3.8 35.0 1.0 C A:GLU419 3.9 55.1 1.0 CG A:ASN91 3.9 43.8 1.0 C A:VAL414 3.9 36.8 1.0 C A:LEU413 3.9 35.0 1.0 CA A:VAL414 4.1 34.2 1.0 CB A:GLU419 4.2 53.4 1.0 N A:THR416 4.2 49.6 1.0 CA A:ASN91 4.3 38.1 1.0 C A:LEU90 4.3 33.4 1.0 CA A:GLU419 4.5 57.4 1.0 CB A:ASN91 4.5 36.9 1.0 CA A:THR416 4.5 59.6 1.0 N A:VAL414 4.5 34.2 1.0 N A:ILE417 4.5 66.2 1.0 CA A:ILE417 4.6 65.0 1.0 N A:SER415 4.6 37.0 1.0 N A:GLU419 4.7 57.0 1.0 O A:ILE417 4.7 60.9 1.0 N A:ASN91 4.8 37.2 1.0 C A:ILE417 4.8 60.8 1.0 OD1 A:ASN91 4.8 49.7 1.0 N A:ASP420 4.8 50.7 1.0 C A:SER415 4.9 52.8 1.0 CA A:ASP420 5.0 59.8 1.0

R.Nowak, J.Kopec, C.Johansson, C.Gileadi, K.Kupinska, C.Strain-Damerell, A.Szykowska, F.Von Delft, N.A.Burgess-Brown, C.H.Arrowsmith, C.Bountra, A.M.Edwards, U.Oppermann. Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with D-2-Hydroxyglutarate To Be Published.