Atomistry » Chlorine » PDB 5fz9-5g5n » 5fzd
Atomistry »
  Chlorine »
    PDB 5fz9-5g5n »
      5fzd »

Chlorine in PDB 5fzd: Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with L-2-Hydroxyglutarate

Protein crystallography data

The structure of Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with L-2-Hydroxyglutarate, PDB code: 5fzd was solved by R.Nowak, J.Kopec, C.Johansson, C.Gileadi, K.Kupinska, C.Strain-Damerell, A.Szykowska, F.Von Delft, N.A.Burgess-Brown, C.H.Arrowsmith, C.Bountra, A.M.Edwards, U.Oppermann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.69 / 2.05
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 141.800, 141.800, 151.410, 90.00, 90.00, 120.00
R / Rfree (%) 19.6 / 23.5

Other elements in 5fzd:

The structure of Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with L-2-Hydroxyglutarate also contains other interesting chemical elements:

Manganese (Mn) 1 atom
Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with L-2-Hydroxyglutarate (pdb code 5fzd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with L-2-Hydroxyglutarate, PDB code: 5fzd:

Chlorine binding site 1 out of 1 in 5fzd

Go back to Chlorine Binding Sites List in 5fzd
Chlorine binding site 1 out of 1 in the Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with L-2-Hydroxyglutarate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with L-2-Hydroxyglutarate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1772

b:70.9
occ:1.00
O A:HOH2055 2.4 62.3 1.0
ND2 A:ASN91 2.6 45.4 1.0
O A:THR416 2.7 57.1 1.0
O A:LEU413 2.8 46.3 1.0
O A:GLU419 2.9 66.8 1.0
O A:LEU90 3.2 42.5 1.0
O A:HOH2057 3.3 53.6 1.0
O A:HOH2058 3.6 76.9 1.0
C A:THR416 3.7 63.7 1.0
CG A:ASN91 3.9 47.3 1.0
O A:VAL414 3.9 38.5 1.0
C A:GLU419 3.9 56.2 1.0
C A:LEU413 4.0 39.9 1.0
C A:VAL414 4.0 41.8 1.0
CA A:VAL414 4.1 39.0 1.0
C A:LEU90 4.2 38.0 1.0
N A:THR416 4.3 53.6 1.0
CA A:ASN91 4.3 42.2 1.0
CB A:GLU419 4.4 62.4 1.0
CB A:ASN91 4.5 42.0 1.0
N A:ILE417 4.5 66.9 1.0
CA A:THR416 4.6 61.7 1.0
N A:VAL414 4.6 39.4 1.0
CA A:GLU419 4.6 67.3 1.0
CA A:ILE417 4.6 66.4 1.0
O A:ILE417 4.6 66.1 1.0
N A:SER415 4.7 43.7 1.0
N A:ASN91 4.7 42.4 1.0
C A:ILE417 4.8 60.0 1.0
OD1 A:ASN91 4.8 54.3 1.0
N A:GLU419 4.8 66.3 1.0
N A:ASP420 4.9 53.1 1.0
CA A:ASP420 5.0 67.4 1.0

Reference:

R.Nowak, J.Kopec, C.Johansson, C.Gileadi, K.Kupinska, C.Strain-Damerell, A.Szykowska, F.Von Delft, N.A.Burgess-Brown, C.H.Arrowsmith, C.Bountra, A.M.Edwards, U.Oppermann. Crystal Structure of the Catalytic Domain of Human JARID1B in Complex with L-2-Hydroxyglutarate To Be Published.
Page generated: Sat Dec 12 11:46:02 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy