Chlorine in PDB 5fzo: Crystal Structure of the Catalytic Domain of Human JMJD1C

The structure of Crystal Structure of the Catalytic Domain of Human JMJD1C, PDB code: 5fzo was solved by R.Nowak, R.Talon, T.Krojer, S.Goubin, M.Mcdonough, M.Fairhead, U.Oppermann, C.Johansson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	55.460 / 1.84
Space group	P 2 21 21
Cell size a, b, c (Å), α, β, γ (°)	45.320, 110.920, 165.310, 90.00, 90.00, 90.00
R / Rfree (%)	19.25 / 23.14

The structure of Crystal Structure of the Catalytic Domain of Human JMJD1C also contains other interesting chemical elements:

Manganese

(Mn)

2 atoms

The binding sites of Chlorine atom in the Crystal Structure of the Catalytic Domain of Human JMJD1C (pdb code 5fzo). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the Catalytic Domain of Human JMJD1C, PDB code: 5fzo:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of the Catalytic Domain of Human JMJD1C


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Catalytic Domain of Human JMJD1C within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl3500 b:31.3 occ:1.00 O A:HOH3146 3.2 48.0 1.0 NH1 A:ARG2277 3.3 36.1 1.0 CA A:MET2274 3.3 27.1 1.0 C A:MET2274 3.3 26.6 1.0 N A:ALA2276 3.4 24.2 1.0 N A:ARG2277 3.4 24.8 1.0 CB A:ALA2276 3.6 25.9 1.0 N A:PRO2275 3.7 27.3 1.0 O A:MET2274 3.7 21.5 1.0 CB A:MET2274 3.7 23.1 1.0 CG A:ARG2277 3.8 33.4 1.0 CA A:ALA2276 3.9 24.4 1.0 CD A:PRO2275 3.9 23.4 1.0 C A:ALA2276 4.1 28.6 1.0 CB A:ARG2277 4.2 23.0 1.0 CZ A:ARG2277 4.3 38.2 1.0 CD A:ARG2277 4.3 34.3 1.0 C A:PRO2275 4.3 26.7 1.0 CA A:ARG2277 4.4 20.7 1.0 CG A:MET2274 4.4 33.3 1.0 O A:MET2273 4.6 27.0 0.5 CA A:PRO2275 4.6 28.9 1.0 CG A:PRO2275 4.6 27.1 1.0 N A:MET2274 4.6 29.4 1.0 O A:MET2273 4.7 26.8 0.5 NE A:ARG2277 4.7 29.6 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of the Catalytic Domain of Human JMJD1C


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Catalytic Domain of Human JMJD1C within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl3500 b:42.4 occ:1.00 NH1 B:ARG2277 3.3 45.7 1.0 N B:ALA2276 3.3 31.8 1.0 O B:HOH3061 3.3 52.5 1.0 N B:ARG2277 3.4 35.0 1.0 C B:MET2274 3.4 40.5 1.0 CA B:MET2274 3.4 37.5 1.0 CB B:ALA2276 3.5 38.1 1.0 N B:PRO2275 3.7 46.7 1.0 CG B:ARG2277 3.8 30.8 1.0 O B:MET2274 3.8 33.9 1.0 CA B:ALA2276 3.8 38.5 1.0 CB B:MET2274 3.9 30.8 1.0 CD B:PRO2275 4.0 41.0 1.0 C B:ALA2276 4.1 33.0 1.0 CB B:ARG2277 4.1 33.1 1.0 CZ B:ARG2277 4.2 39.9 1.0 C B:PRO2275 4.2 30.6 1.0 CD B:ARG2277 4.3 30.9 1.0 CA B:ARG2277 4.4 33.7 1.0 CA B:PRO2275 4.5 35.6 1.0 O B:MET2273 4.6 43.5 1.0 CG B:PRO2275 4.6 39.9 1.0 CG B:MET2274 4.6 46.9 1.0 NE B:ARG2277 4.6 35.1 1.0 N B:MET2274 4.7 41.8 1.0 CD1 B:LEU2205 5.0 44.6 1.0

R.Nowak, S.Goubin, M.Mcdonough, M.Fairhead, U.Oppermann, C.Johansson. Crystal Structure of the Catalytic Domain of Human JMJD1C To Be Published.