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Chlorine in PDB 5g2d: The Crystal Structure of Light-Driven Chloride Pump Clr (T102N) Mutant at pH 4.5.

Protein crystallography data

The structure of The Crystal Structure of Light-Driven Chloride Pump Clr (T102N) Mutant at pH 4.5., PDB code: 5g2d was solved by K.L.Kim, S.K.Kwon, S.H.Jun, J.S.Cha, H.Y.Kim, J.H.Kim, H.S.Cho, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 58.36 / 1.80
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 103.252, 49.447, 78.402, 90.00, 131.89, 90.00
R / Rfree (%) 17.5 / 20.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Crystal Structure of Light-Driven Chloride Pump Clr (T102N) Mutant at pH 4.5. (pdb code 5g2d). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the The Crystal Structure of Light-Driven Chloride Pump Clr (T102N) Mutant at pH 4.5., PDB code: 5g2d:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5g2d

Go back to Chlorine Binding Sites List in 5g2d
Chlorine binding site 1 out of 2 in the The Crystal Structure of Light-Driven Chloride Pump Clr (T102N) Mutant at pH 4.5.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Crystal Structure of Light-Driven Chloride Pump Clr (T102N) Mutant at pH 4.5. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1276

b:42.7
occ:1.00
ND2 A:ASN98 2.8 32.5 1.0
CE A:LYS235 3.2 27.3 1.0
O A:HOH2050 3.3 23.8 1.0
ND2 A:ASN102 3.4 34.0 1.0
CD1 A:TRP99 3.4 19.9 1.0
NE1 A:TRP99 3.6 18.3 1.0
NZ A:LYS235 3.9 33.7 1.0
CG A:ASN98 3.9 30.0 1.0
CB A:ASN98 4.2 21.9 1.0
CG A:ASN102 4.3 31.5 1.0
C15 A:RET1274 4.3 27.2 1.0
CB A:ALA61 4.4 16.6 1.0
C14 A:RET1274 4.4 21.6 1.0
CB A:ASN102 4.4 22.7 1.0
CD A:LYS235 4.4 26.5 1.0
CA A:ALA61 4.5 17.7 1.0
O A:ARG95 4.7 18.5 1.0
CG A:TRP99 4.8 16.2 1.0
N A:TRP99 4.8 18.7 1.0
C A:ASN98 4.8 22.3 1.0
CE2 A:TRP99 5.0 18.5 1.0

Chlorine binding site 2 out of 2 in 5g2d

Go back to Chlorine Binding Sites List in 5g2d
Chlorine binding site 2 out of 2 in the The Crystal Structure of Light-Driven Chloride Pump Clr (T102N) Mutant at pH 4.5.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Crystal Structure of Light-Driven Chloride Pump Clr (T102N) Mutant at pH 4.5. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1277

b:39.2
occ:1.00
N A:LYS46 3.1 23.2 1.0
CB A:LYS46 3.2 31.2 1.0
CD A:PRO45 3.5 24.5 1.0
N A:PRO45 3.7 21.7 1.0
CA A:LYS46 3.7 27.3 1.0
CB A:ALA44 3.8 22.4 1.0
CB A:PRO45 4.0 25.6 1.0
C A:PRO45 4.0 23.7 1.0
CG A:PRO45 4.2 24.9 1.0
CE A:LYS46 4.2 48.2 1.0
CA A:PRO45 4.2 25.4 1.0
C A:ALA44 4.3 26.2 1.0
CG A:LYS46 4.4 44.1 1.0
CD A:LYS46 4.4 47.0 1.0
CA A:ALA44 4.6 20.5 1.0
O A:ALA44 4.9 23.4 1.0

Reference:

K.Kim, S.Kwon, S.Jun, J.S.Cha, H.Kim, W.Lee, J.F.Kim, H.Cho. Crystal Structure and Functional Characterization of A Light-Driven Chloride Pump Having An Ntq Motif. Nat.Commun. V. 7 12677 2016.
ISSN: ESSN 2041-1723
PubMed: 27554809
DOI: 10.1038/NCOMMS12677
Page generated: Fri Jul 26 08:19:15 2024

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