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Chlorine in PDB 5g3t: The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum

Enzymatic activity of The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum

All present enzymatic activity of The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum:
1.4.3.23;

Protein crystallography data

The structure of The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum, PDB code: 5g3t was solved by J.Krausze, J.Rabe, J.Moser, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.99 / 1.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 68.090, 89.160, 144.430, 90.00, 92.66, 90.00
R / Rfree (%) 15.7 / 19.2

Other elements in 5g3t:

The structure of The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum also contains other interesting chemical elements:

Magnesium (Mg) 6 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Chlorine atom in the The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum (pdb code 5g3t). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 11 binding sites of Chlorine where determined in the The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum, PDB code: 5g3t:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 11 in 5g3t

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Chlorine binding site 1 out of 11 in the The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum


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Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl421

b:23.1
occ:1.00
 H A:HIS361 2.3 19.6 1.0
HB3 A:TRP359 2.9 14.0 1.0
HE3 A:TRP359 3.0 16.4 1.0
N A:HIS361 3.1 16.3 1.0
HB2 A:HIS361 3.1 26.4 1.0
C A:HIS361 3.4 13.1 1.0
HA A:TRP359 3.5 16.8 1.0
H A:ALA360 3.5 14.3 1.0
HA2 A:GLY362 3.6 13.8 1.0
N A:ALA360 3.6 11.9 1.0
CA A:HIS361 3.6 16.0 1.0
O A:HIS361 3.6 18.8 1.0
HD3 A:ARG46 3.7 19.8 1.0
CB A:TRP359 3.8 11.7 1.0
C A:TRP359 3.8 13.2 1.0
N A:GLY362 3.8 11.6 1.0
O A:HOH2051 3.8 24.8 1.0
CB A:HIS361 3.8 22.0 1.0
CA A:TRP359 3.8 14.0 1.0
CE3 A:TRP359 3.9 13.7 1.0
H A:GLY362 4.2 13.9 1.0
O A:HOH2326 4.2 21.8 1.0
C A:ALA360 4.2 15.2 1.0
CA A:GLY362 4.2 11.5 1.0
HB1 A:ALA360 4.2 25.5 1.0
HD2 A:HIS361 4.2 26.2 1.0
HB2 A:TRP359 4.4 14.0 1.0
CA A:ALA360 4.4 13.8 1.0
O A:TRP359 4.4 13.9 1.0
HG2 A:ARG46 4.5 19.6 1.0
HB3 A:HIS361 4.5 26.4 1.0
HA A:HIS361 4.6 19.2 1.0
CD2 A:TRP359 4.6 11.8 1.0
CG A:TRP359 4.6 9.8 1.0
CD A:ARG46 4.6 16.5 1.0
CG A:HIS361 4.7 23.7 1.0
HA3 A:GLY362 4.8 13.8 1.0
CD2 A:HIS361 4.8 21.9 1.0
O A:HOH2324 4.8 33.9 1.0
CB A:ALA360 4.9 21.2 1.0
HG3 A:ARG46 4.9 19.6 1.0
HZ3 A:TRP359 4.9 17.9 1.0
CG A:ARG46 4.9 16.3 1.0
CZ3 A:TRP359 4.9 14.9 1.0
O A:HOH2357 4.9 21.0 1.0

Chlorine binding site 2 out of 11 in 5g3t

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Chlorine binding site 2 out of 11 in the The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl422

b:28.5
occ:1.00
 H A:ALA43 2.3 28.0 1.0
HE22 A:GLN189 2.3 30.5 1.0
HZ3 A:LYS192 2.4 34.0 1.0
O A:HOH2040 2.9 30.0 1.0
HA A:GLU42 3.0 25.8 1.0
NE2 A:GLN189 3.1 25.4 1.0
N A:ALA43 3.2 23.3 1.0
NZ A:LYS192 3.2 28.3 1.0
HB3 A:GLU42 3.3 40.2 1.0
HZ1 A:LYS192 3.3 34.0 1.0
HD2 A:LYS192 3.4 28.6 1.0
HB1 A:ALA43 3.5 20.4 1.0
HE21 A:GLN189 3.5 30.5 1.0
CA A:GLU42 3.6 21.5 1.0
HD12 A:LEU204 3.7 39.4 1.0
CB A:GLU42 3.8 33.5 1.0
HD11 A:LEU204 3.8 39.4 1.0
HZ2 A:LYS192 3.8 34.0 1.0
O A:HOH2225 3.9 40.8 1.0
HD3 A:LYS192 3.9 28.6 1.0
C A:GLU42 3.9 22.0 1.0
HB3 A:ALA43 3.9 20.4 1.0
CD A:LYS192 3.9 23.8 1.0
CB A:ALA43 4.0 17.0 1.0
CG A:GLU42 4.0 36.1 1.0
CE A:LYS192 4.0 23.4 1.0
CD A:GLN189 4.1 40.6 1.0
CD1 A:LEU204 4.1 32.8 1.0
CA A:ALA43 4.2 16.8 1.0
OE1 A:GLN189 4.2 34.0 1.0
HE3 A:LYS192 4.3 28.1 1.0
HD13 A:LEU204 4.3 39.4 1.0
HB2 A:GLU42 4.7 40.2 1.0
O A:ALA43 4.7 18.7 1.0
O A:GLN41 4.8 27.9 1.0
O A:HOH2222 4.8 44.7 1.0
HE2 A:LYS192 4.9 28.1 1.0
C A:ALA43 4.9 16.7 1.0
HA A:ALA43 4.9 20.2 1.0
HB2 A:ALA43 4.9 20.4 1.0
N A:GLU42 4.9 26.3 1.0

Chlorine binding site 3 out of 11 in 5g3t

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Chlorine binding site 3 out of 11 in the The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl422

b:23.4
occ:1.00
 H B:HIS97 2.4 18.9 1.0
HB3 B:HIS97 3.1 18.6 1.0
HB2 B:SER96 3.2 24.1 1.0
N B:HIS97 3.2 15.7 1.0
HA B:SER96 3.3 19.3 1.0
HB2 B:HIS97 3.5 18.6 1.0
CB B:HIS97 3.7 15.5 1.0
CA B:SER96 3.9 16.1 1.0
CB B:SER96 3.9 20.1 1.0
C B:SER96 4.1 16.1 1.0
CA B:HIS97 4.1 12.8 1.0
HB3 B:SER96 4.3 24.1 1.0
H B:VAL98 4.5 14.6 1.0
HA B:HIS97 4.7 15.3 1.0

Chlorine binding site 4 out of 11 in 5g3t

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Chlorine binding site 4 out of 11 in the The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl423

b:25.3
occ:1.00
 H B:HIS361 2.4 21.9 1.0
HB3 B:TRP359 2.9 16.6 1.0
HE3 B:TRP359 3.0 19.3 1.0
O A:HOH2108 3.1 39.0 1.0
O B:HOH2008 3.1 37.0 1.0
N B:HIS361 3.2 18.3 1.0
HB2 B:HIS361 3.3 30.8 1.0
C B:HIS361 3.4 20.6 1.0
H B:ALA360 3.5 17.7 1.0
HA B:TRP359 3.5 18.4 1.0
HA2 B:GLY362 3.6 18.1 1.0
N B:ALA360 3.6 14.7 1.0
CA B:HIS361 3.7 20.3 1.0
HD3 B:ARG46 3.7 23.7 1.0
O B:HIS361 3.7 20.7 1.0
CB B:TRP359 3.7 13.9 1.0
N B:GLY362 3.8 14.9 1.0
C B:TRP359 3.8 16.9 1.0
CA B:TRP359 3.8 15.3 1.0
CE3 B:TRP359 3.9 16.1 1.0
CB B:HIS361 3.9 25.6 1.0
O B:HOH2043 4.0 26.0 1.0
H B:GLY362 4.1 17.8 1.0
CA B:GLY362 4.2 15.1 1.0
O A:HOH2251 4.2 24.4 1.0
C B:ALA360 4.2 18.3 1.0
HD2 B:HIS361 4.3 31.1 1.0
HG2 B:ARG46 4.3 23.7 1.0
HB1 B:ALA360 4.3 30.2 1.0
HB2 B:TRP359 4.4 16.6 1.0
O B:TRP359 4.4 17.6 1.0
CA B:ALA360 4.4 17.3 1.0
CD B:ARG46 4.6 19.7 1.0
CD2 B:TRP359 4.6 14.6 1.0
CG B:TRP359 4.6 12.7 1.0
HA B:HIS361 4.6 24.4 1.0
HB3 B:HIS361 4.6 30.8 1.0
O B:HOH2282 4.7 42.3 1.0
CG B:HIS361 4.8 28.4 1.0
HA3 B:GLY362 4.8 18.1 1.0
HG3 B:ARG46 4.8 23.7 1.0
CG B:ARG46 4.8 19.8 1.0
CD2 B:HIS361 4.8 25.9 1.0
O B:HOH2299 4.9 25.7 1.0
HZ3 B:TRP359 4.9 19.3 1.0
CZ3 B:TRP359 4.9 16.1 1.0
CB B:ALA360 4.9 25.2 1.0

Chlorine binding site 5 out of 11 in 5g3t

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Chlorine binding site 5 out of 11 in the The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl420

b:57.1
occ:1.00
 HH22 C:ARG410 2.2 36.4 1.0
NH2 C:ARG410 3.0 30.4 1.0
HH12 C:ARG410 3.2 31.7 1.0
HH12 C:ARG406 3.3 49.9 1.0
NH1 C:ARG406 3.5 41.6 1.0
HH21 C:ARG410 3.5 36.4 1.0
HH11 C:ARG406 3.7 49.9 1.0
NH1 C:ARG410 3.8 26.4 1.0
CZ C:ARG410 3.9 22.5 1.0
CZ C:ARG406 4.0 39.5 1.0
HH22 C:ARG406 4.1 41.1 1.0
NH2 C:ARG406 4.3 34.3 1.0
HD2 C:ARG406 4.5 30.8 1.0
HH11 C:ARG410 4.6 31.7 1.0
O C:HOH2347 4.7 35.9 1.0
NE C:ARG406 4.7 33.4 1.0
HH21 C:ARG406 4.8 41.1 1.0
O C:HOH2343 4.9 37.6 1.0

Chlorine binding site 6 out of 11 in 5g3t

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Chlorine binding site 6 out of 11 in the The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl421

b:25.5
occ:1.00
 H C:HIS97 2.3 22.9 1.0
HB3 C:HIS97 3.2 18.3 1.0
N C:HIS97 3.2 19.1 1.0
HB2 C:SER96 3.2 22.0 1.0
HA C:SER96 3.4 23.6 1.0
HB2 C:HIS97 3.5 18.3 1.0
CB C:HIS97 3.7 15.3 1.0
CA C:SER96 3.9 19.7 1.0
CB C:SER96 4.0 18.3 1.0
C C:SER96 4.1 21.8 1.0
CA C:HIS97 4.1 16.9 1.0
HB3 C:SER96 4.4 22.0 1.0
H C:VAL98 4.5 17.0 1.0
HA C:HIS97 4.7 20.3 1.0

Chlorine binding site 7 out of 11 in 5g3t

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Chlorine binding site 7 out of 11 in the The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl422

b:24.2
occ:1.00
 H C:HIS361 2.3 18.2 1.0
O C:HOH2020 2.8 30.9 1.0
HE3 C:TRP359 2.9 16.9 1.0
HB3 C:TRP359 3.0 13.5 1.0
N C:HIS361 3.2 15.2 1.0
HB2 C:HIS361 3.2 24.8 1.0
H C:ALA360 3.4 15.4 1.0
C C:HIS361 3.4 14.7 1.0
HA C:TRP359 3.5 12.9 1.0
HA2 C:GLY362 3.6 17.8 1.0
N C:ALA360 3.6 12.8 1.0
O C:HIS361 3.6 18.1 1.0
HD3 C:ARG46 3.6 20.2 1.0
CA C:HIS361 3.7 16.1 1.0
N C:GLY362 3.8 13.0 1.0
C C:TRP359 3.8 13.7 1.0
CB C:TRP359 3.8 11.3 1.0
CE3 C:TRP359 3.8 14.1 1.0
CA C:TRP359 3.9 10.8 1.0
CB C:HIS361 3.9 20.7 1.0
O C:HOH2328 4.1 20.6 1.0
H C:GLY362 4.2 15.7 1.0
CA C:GLY362 4.2 14.9 1.0
C C:ALA360 4.2 15.7 1.0
HB1 C:ALA360 4.3 19.8 1.0
O C:HOH2057 4.3 25.5 1.0
HG2 C:ARG46 4.3 16.1 1.0
HD2 C:HIS361 4.4 28.2 1.0
CA C:ALA360 4.4 13.8 1.0
HB2 C:TRP359 4.4 13.5 1.0
O C:TRP359 4.5 13.7 1.0
CD C:ARG46 4.5 16.8 1.0
CD2 C:TRP359 4.5 10.9 1.0
HA C:HIS361 4.6 19.4 1.0
HB3 C:HIS361 4.6 24.8 1.0
CG C:TRP359 4.6 10.4 1.0
O C:HOH2326 4.7 30.0 1.0
HG3 C:ARG46 4.7 16.1 1.0
HZ3 C:TRP359 4.7 16.4 1.0
CG C:ARG46 4.7 13.4 1.0
HA3 C:GLY362 4.7 17.8 1.0
CZ3 C:TRP359 4.8 13.7 1.0
CG C:HIS361 4.8 19.5 1.0
CB C:ALA360 4.9 16.5 1.0
O C:HOH2355 4.9 22.1 1.0
CD2 C:HIS361 4.9 23.5 1.0

Chlorine binding site 8 out of 11 in 5g3t

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Chlorine binding site 8 out of 11 in the The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl423

b:26.2
occ:1.00
 HD21 C:ASN293 2.5 20.6 1.0
O C:HOH2147 2.9 33.4 1.0
HG C:SER339 2.9 31.5 1.0
HB3 C:ASN293 2.9 24.5 1.0
O C:HOH2283 3.0 16.3 1.0
HB2 C:SER339 3.0 21.7 1.0
ND2 C:ASN293 3.3 17.2 1.0
OG C:SER339 3.4 26.3 1.0
HA C:ALA340 3.6 22.9 1.0
CB C:SER339 3.7 18.1 1.0
O C:SER339 3.8 21.1 1.0
C C:SER339 3.8 23.0 1.0
CB C:ASN293 3.8 20.4 1.0
HD22 C:ASN293 3.8 20.6 1.0
HB C:VAL291 4.0 19.6 1.0
CG C:ASN293 4.1 17.5 1.0
N C:ALA340 4.1 21.1 1.0
HB2 C:ASN293 4.1 24.5 1.0
O C:ASP292 4.2 11.8 1.0
CA C:ALA340 4.3 19.1 1.0
CA C:SER339 4.4 19.0 1.0
HB3 C:SER339 4.5 21.7 1.0
H C:ALA340 4.5 25.2 1.0
O C:HOH2282 4.5 20.9 1.0
HB3 C:ALA340 4.6 25.5 1.0
C C:ASP292 4.6 12.3 1.0
H C:ASP292 4.8 15.7 1.0
HA C:SER339 4.8 22.8 1.0
N C:ASN293 4.9 13.1 1.0
CA C:ASN293 4.9 11.8 1.0
CB C:VAL291 5.0 16.3 1.0

Chlorine binding site 9 out of 11 in 5g3t

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Chlorine binding site 9 out of 11 in the The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl424

b:25.8
occ:1.00
 HZ3 C:LYS192 2.2 32.2 1.0
H C:ALA43 2.3 21.8 1.0
HE22 C:GLN189 2.6 27.9 1.0
HA C:GLU42 2.9 25.3 1.0
NZ C:LYS192 3.0 26.9 1.0
N C:ALA43 3.1 18.1 1.0
HZ1 C:LYS192 3.2 32.2 1.0
HB3 C:GLU42 3.4 32.4 1.0
HD2 C:LYS192 3.4 24.4 1.0
HB1 C:ALA43 3.4 23.2 1.0
NE2 C:GLN189 3.4 23.2 1.0
HZ2 C:LYS192 3.5 32.2 1.0
HD12 C:LEU204 3.6 29.6 1.0
CA C:GLU42 3.6 21.1 1.0
HD11 C:LEU204 3.7 29.6 1.0
O C:HOH2216 3.8 36.6 1.0
HE21 C:GLN189 3.8 27.9 1.0
HB3 C:ALA43 3.8 23.2 1.0
CB C:GLU42 3.9 27.0 1.0
C C:GLU42 3.9 21.7 1.0
CE C:LYS192 3.9 24.9 1.0
CD C:LYS192 3.9 20.4 1.0
CB C:ALA43 3.9 19.4 1.0
HD3 C:LYS192 4.0 24.4 1.0
CD1 C:LEU204 4.0 24.6 1.0
CA C:ALA43 4.1 17.6 1.0
HE3 C:LYS192 4.1 29.9 1.0
HD13 C:LEU204 4.2 29.6 1.0
CG C:GLU42 4.2 32.4 1.0
CD C:GLN189 4.3 39.2 1.0
OE1 C:GLN189 4.4 27.6 1.0
O C:ALA43 4.7 19.7 1.0
HB2 C:GLU42 4.8 32.4 1.0
HE2 C:LYS192 4.8 29.9 1.0
O C:GLN41 4.8 22.2 1.0
HA C:ALA43 4.8 21.1 1.0
C C:ALA43 4.8 17.1 1.0
HB2 C:ALA43 4.8 23.2 1.0
N C:GLU42 4.9 19.0 1.0

Chlorine binding site 10 out of 11 in 5g3t

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Chlorine binding site 10 out of 11 in the The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of The Structure of the L-Tryptophan Oxidase Vioa From Chromobacterium Violaceum within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl423

b:27.0
occ:1.00
 HZ3 D:LYS192 2.2 37.2 1.0
H D:ALA43 2.2 20.3 1.0
HE22 D:GLN189 2.6 30.3 1.0
HA D:GLU42 3.0 24.2 1.0
NZ D:LYS192 3.0 31.0 1.0
N D:ALA43 3.1 16.9 1.0
HZ1 D:LYS192 3.2 37.2 1.0
HD2 D:LYS192 3.2 24.5 1.0
HB1 D:ALA43 3.2 20.9 1.0
HB3 D:GLU42 3.4 29.6 1.0
NE2 D:GLN189 3.4 25.2 1.0
HZ2 D:LYS192 3.6 37.2 1.0
HD12 D:LEU204 3.6 30.2 1.0
CA D:GLU42 3.7 20.2 1.0
HB3 D:ALA43 3.7 20.9 1.0
HD11 D:LEU204 3.7 30.2 1.0
CB D:ALA43 3.8 17.4 1.0
HE21 D:GLN189 3.8 30.3 1.0
CD D:LYS192 3.8 20.4 1.0
C D:GLU42 3.9 17.9 1.0
CE D:LYS192 3.9 24.4 1.0
HD3 D:LYS192 3.9 24.5 1.0
CB D:GLU42 3.9 24.7 1.0
O D:HOH2194 3.9 37.6 1.0
CA D:ALA43 4.0 15.9 1.0
CD1 D:LEU204 4.0 25.2 1.0
HE3 D:LYS192 4.1 29.3 1.0
HD13 D:LEU204 4.2 30.2 1.0
CD D:GLN189 4.4 37.6 1.0
CG D:GLU42 4.4 33.2 1.0
OE1 D:GLN189 4.5 32.3 1.0
O D:HOH2040 4.5 35.4 1.0
O D:ALA43 4.6 18.9 1.0
HB2 D:ALA43 4.7 20.9 1.0
HE2 D:LYS192 4.7 29.3 1.0
HA D:ALA43 4.7 19.1 1.0
C D:ALA43 4.8 16.9 1.0
HB2 D:GLU42 4.8 29.6 1.0
O D:GLN41 4.8 23.7 1.0
N D:GLU42 5.0 19.9 1.0

Reference:

J.Fuller, R.Roepke, J.Krausze, K.E.Rennhack, N.P.Daniel, W.Blankenfeldt, S.Schulz, D.Jahn, J.Moser. Biosynthesis of Violacein: Structure and Function of L-Tryptophan Oxidase Vioa Chromobacterium Violaceum J.Biol.Chem. V. 291 20068 2016.
ISSN: ISSN 0021-9258
PubMed: 27466367
DOI: 10.1074/JBC.M116.741561
Page generated: Fri Jul 26 08:20:01 2024

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