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Chlorine in PDB 5ggy: X-Ray Crystal Structure of Periplasmic Desferal Binding Protein Fhud From Vibrio Cholerae

Protein crystallography data

The structure of X-Ray Crystal Structure of Periplasmic Desferal Binding Protein Fhud From Vibrio Cholerae, PDB code: 5ggy was solved by S.Agarwal, S.Dey, B.Ghosh, J.Dasgupta, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.32 / 2.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 57.246, 71.746, 125.889, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 24

Chlorine Binding Sites:

The binding sites of Chlorine atom in the X-Ray Crystal Structure of Periplasmic Desferal Binding Protein Fhud From Vibrio Cholerae (pdb code 5ggy). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the X-Ray Crystal Structure of Periplasmic Desferal Binding Protein Fhud From Vibrio Cholerae, PDB code: 5ggy:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5ggy

Go back to Chlorine Binding Sites List in 5ggy
Chlorine binding site 1 out of 2 in the X-Ray Crystal Structure of Periplasmic Desferal Binding Protein Fhud From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Crystal Structure of Periplasmic Desferal Binding Protein Fhud From Vibrio Cholerae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl401

b:32.3
occ:1.00
O A:HOH519 3.2 21.6 1.0
NE1 A:TRP293 3.3 19.4 1.0
NH1 A:ARG102 3.3 25.9 1.0
CB A:TRP61 3.4 20.6 1.0
CZ2 A:TRP293 3.7 30.4 1.0
N A:TRP61 3.7 26.8 1.0
CE2 A:TRP293 3.8 28.0 1.0
ND2 A:ASN60 3.8 33.3 1.0
CD A:ARG102 3.8 25.8 1.0
CG A:ASN60 4.0 28.5 1.0
OD1 A:ASN60 4.0 26.0 1.0
CA A:TRP61 4.1 25.2 1.0
CG A:TRP61 4.1 19.9 1.0
N A:ASP62 4.2 14.2 1.0
O A:TYR295 4.3 27.5 1.0
CE3 A:TRP61 4.3 21.0 1.0
CD2 A:TRP61 4.4 19.9 1.0
CZ A:ARG102 4.4 21.5 1.0
CD1 A:TRP293 4.5 22.9 1.0
NE A:ARG102 4.6 20.4 1.0
C A:TRP61 4.6 26.4 1.0
C A:ASN60 4.8 23.5 1.0
CB A:ASN60 4.8 20.7 1.0
OD1 A:ASP62 4.8 25.3 1.0
CH2 A:TRP293 4.9 26.6 1.0
CB A:TYR295 5.0 16.8 1.0
O A:HOH579 5.0 23.2 1.0

Chlorine binding site 2 out of 2 in 5ggy

Go back to Chlorine Binding Sites List in 5ggy
Chlorine binding site 2 out of 2 in the X-Ray Crystal Structure of Periplasmic Desferal Binding Protein Fhud From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of X-Ray Crystal Structure of Periplasmic Desferal Binding Protein Fhud From Vibrio Cholerae within 5.0Å range:
probe atom residue distance (Å) B Occ
N:Cl401

b:33.8
occ:1.00
CB N:TRP61 3.4 17.4 1.0
NE1 N:TRP293 3.5 27.6 1.0
NH1 N:ARG102 3.5 25.0 1.0
N N:TRP61 3.6 25.5 1.0
O N:HOH561 3.6 25.7 1.0
ND2 N:ASN60 3.7 23.8 1.0
CD N:ARG102 3.8 22.9 1.0
CG N:ASN60 3.9 28.2 1.0
OD1 N:ASN60 3.9 23.8 1.0
CA N:TRP61 4.0 21.0 1.0
CZ2 N:TRP293 4.0 31.0 1.0
CE2 N:TRP293 4.1 28.9 1.0
CG N:TRP61 4.1 18.1 1.0
N N:ASP62 4.1 18.4 1.0
CE3 N:TRP61 4.4 25.1 1.0
CD2 N:TRP61 4.4 16.1 1.0
O N:TYR295 4.4 29.6 1.0
CZ N:ARG102 4.5 31.9 1.0
C N:TRP61 4.5 28.8 1.0
CD1 N:TRP293 4.6 24.1 1.0
NE N:ARG102 4.6 25.5 1.0
C N:ASN60 4.6 22.1 1.0
CB N:ASN60 4.7 23.7 1.0
OD1 N:ASP62 4.8 30.9 1.0
CA N:ASN60 4.9 16.1 1.0
CG N:ARG102 4.9 21.9 1.0

Reference:

S.Agarwal, M.Biswas, J.Dasgupta. X-Ray Crystal Structure of Periplasmic Desferal Binding Protein Fhud From Vibrio Cholerae To Be Published.
Page generated: Sat Dec 12 11:46:54 2020

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