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Chlorine in PDB 5grq: Crystal Structure of Dhb Domain of Daxx in Complex with An Atrx Peptide

Enzymatic activity of Crystal Structure of Dhb Domain of Daxx in Complex with An Atrx Peptide

All present enzymatic activity of Crystal Structure of Dhb Domain of Daxx in Complex with An Atrx Peptide:
3.6.4.12;

Protein crystallography data

The structure of Crystal Structure of Dhb Domain of Daxx in Complex with An Atrx Peptide, PDB code: 5grq was solved by H.Li, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.34 / 1.58
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 53.428, 56.217, 102.917, 90.00, 90.00, 90.00
R / Rfree (%) 15.8 / 17.9

Other elements in 5grq:

The structure of Crystal Structure of Dhb Domain of Daxx in Complex with An Atrx Peptide also contains other interesting chemical elements:

Zinc (Zn) 11 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Dhb Domain of Daxx in Complex with An Atrx Peptide (pdb code 5grq). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of Dhb Domain of Daxx in Complex with An Atrx Peptide, PDB code: 5grq:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 5grq

Go back to Chlorine Binding Sites List in 5grq
Chlorine binding site 1 out of 4 in the Crystal Structure of Dhb Domain of Daxx in Complex with An Atrx Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Dhb Domain of Daxx in Complex with An Atrx Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:12.1
occ:1.00
 ZN A:ZN207 2.2 11.2 1.0
O1 A:GOL203 3.0 34.1 1.0
N B:LYS56 3.3 12.5 1.0
OE1 A:GLU104 3.4 10.7 1.0
NE2 A:HIS137 3.6 11.3 1.0
CA B:GLY55 3.7 14.2 1.0
C1 A:GOL203 3.7 32.3 1.0
CL A:CL205 3.8 12.0 1.0
OE2 A:GLU104 3.8 12.4 1.0
CG B:LYS56 3.9 19.6 1.0
CD A:GLU104 3.9 11.9 1.0
C B:GLY55 4.0 12.8 1.0
CB B:LYS56 4.1 14.6 1.0
CA B:LYS56 4.3 11.8 1.0
O B:HOH327 4.3 30.6 1.0
O A:HOH380 4.4 17.3 1.0
CE1 A:HIS137 4.4 9.0 1.0
O A:HOH388 4.5 22.6 1.0
CD2 A:HIS137 4.6 11.0 1.0
CD B:LYS56 4.7 25.7 1.0
NZ B:LYS56 4.9 31.4 1.0
N B:GLY55 5.0 12.9 1.0

Chlorine binding site 2 out of 4 in 5grq

Go back to Chlorine Binding Sites List in 5grq
Chlorine binding site 2 out of 4 in the Crystal Structure of Dhb Domain of Daxx in Complex with An Atrx Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Dhb Domain of Daxx in Complex with An Atrx Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:12.0
occ:1.00
 ZN A:ZN207 2.3 11.2 1.0
O A:HOH401 3.2 19.4 1.0
OE1 A:GLU104 3.3 10.7 1.0
NE2 A:HIS137 3.4 11.3 1.0
CD2 A:HIS137 3.5 11.0 1.0
O A:HOH388 3.6 22.6 1.0
O B:HOH327 3.7 30.6 1.0
CL A:CL204 3.8 12.1 1.0
CB B:LYS56 3.9 14.6 1.0
CA A:PHE99 3.9 10.1 1.0
CB A:PHE99 4.0 10.0 1.0
CD2 A:LEU98 4.0 17.1 1.0
N A:PHE99 4.1 11.4 1.0
CD1 A:PHE99 4.1 11.1 1.0
CG A:LEU98 4.3 13.5 1.0
CD B:LYS56 4.4 25.7 1.0
CG B:LYS56 4.4 19.6 1.0
CD A:GLU104 4.5 11.9 1.0
CG A:PHE99 4.6 9.8 1.0
C A:LEU98 4.6 9.4 1.0
O B:LYS56 4.7 14.1 1.0
CE1 A:HIS137 4.7 9.0 1.0
N B:LYS56 4.7 12.5 1.0
CG A:HIS137 4.8 8.9 1.0
CA B:LYS56 4.8 11.8 1.0
CB A:LEU98 4.8 10.6 1.0
O B:HOH378 4.9 31.2 1.0
O A:LEU98 4.9 10.9 1.0
OG A:SER102 4.9 9.8 1.0

Chlorine binding site 3 out of 4 in 5grq

Go back to Chlorine Binding Sites List in 5grq
Chlorine binding site 3 out of 4 in the Crystal Structure of Dhb Domain of Daxx in Complex with An Atrx Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Dhb Domain of Daxx in Complex with An Atrx Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl206

b:18.9
occ:1.00
 ZN A:ZN212 2.3 12.7 1.0
O A:HOH390 3.3 15.2 1.0
O A:HOH400 3.4 40.0 1.0
N A:LEU61 3.5 12.0 1.0
ND1 B:HIS96 3.6 14.8 1.0
OXT A:ACT210 3.6 25.0 1.0
O A:ACT210 3.6 11.2 1.0
CE1 B:HIS96 3.6 15.7 1.0
N A:LYS60 3.8 9.8 1.0
CG A:LEU61 3.8 19.5 1.0
SG A:CYS58 3.8 10.5 1.0
CB A:LYS60 3.9 10.4 1.0
C A:ACT210 3.9 18.9 1.0
O A:CYS58 4.0 13.9 1.0
CB A:LEU61 4.1 14.0 1.0
CA A:LYS60 4.2 9.1 1.0
CD1 A:LEU61 4.3 20.2 1.0
O A:HOH341 4.3 28.5 1.0
C A:LYS60 4.4 10.4 1.0
CB A:CYS58 4.4 9.9 1.0
C A:CYS58 4.4 12.0 1.0
CA A:LEU61 4.4 12.8 1.0
C A:TYR59 4.5 11.3 1.0
N A:TYR59 4.8 9.8 1.0
CA A:TYR59 4.8 9.7 1.0
O A:HOH432 4.8 34.7 1.0
CG B:HIS96 4.9 12.2 1.0
NE2 B:HIS96 4.9 15.4 1.0
CD2 A:LEU61 5.0 23.5 1.0

Chlorine binding site 4 out of 4 in 5grq

Go back to Chlorine Binding Sites List in 5grq
Chlorine binding site 4 out of 4 in the Crystal Structure of Dhb Domain of Daxx in Complex with An Atrx Peptide


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Dhb Domain of Daxx in Complex with An Atrx Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl201

b:15.7
occ:1.00
 ZN A:ZN208 2.2 11.7 1.0
O B:HOH369 3.4 16.1 1.0
ND1 A:HIS96 3.5 12.4 1.0
OXT A:ACT201 3.5 10.9 1.0
O A:ACT201 3.6 28.8 1.0
CE1 A:HIS96 3.6 13.0 1.0
N B:LEU61 3.6 10.8 1.0
CG B:LEU61 3.6 17.1 1.0
O A:HOH451 3.7 35.2 1.0
O B:HOH353 3.7 17.6 1.0
O B:CYS58 3.7 11.8 1.0
SG B:CYS58 3.7 10.7 1.0
C A:ACT201 3.9 20.6 1.0
CB B:LYS60 3.9 11.3 1.0
CB B:LEU61 4.0 14.2 1.0
CD1 B:LEU61 4.0 20.4 1.0
N B:LYS60 4.0 9.1 1.0
CB B:CYS58 4.3 10.2 1.0
CA B:LYS60 4.3 9.2 1.0
O B:HOH375 4.3 31.1 1.0
C B:CYS58 4.3 10.8 1.0
O A:HOH402 4.3 50.2 1.0
CA B:LEU61 4.4 11.8 1.0
C B:LYS60 4.5 9.8 1.0
C B:TYR59 4.8 9.2 1.0
CG A:HIS96 4.9 11.5 1.0
CD2 B:LEU61 4.9 25.4 1.0
NE2 A:HIS96 4.9 14.5 1.0
CA B:CYS58 5.0 9.6 1.0

Reference:

H.Li, H.Li. N/A N/A.
Page generated: Fri Jul 26 08:32:08 2024

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