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Chlorine in PDB 5gwb: Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection

Enzymatic activity of Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection

All present enzymatic activity of Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection:
3.2.1.17;

Protein crystallography data

The structure of Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection, PDB code: 5gwb was solved by M.V.Hosur, R.M.Kini, C.Yeow, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.15 / 2.00
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.360, 77.360, 36.690, 90.00, 90.00, 90.00
R / Rfree (%) 18.2 / 23.3

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection (pdb code 5gwb). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection, PDB code: 5gwb:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in 5gwb

Go back to Chlorine Binding Sites List in 5gwb
Chlorine binding site 1 out of 5 in the Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:33.1
occ:1.00
 N A:ASN74 3.0 17.1 1.0
NE A:ARG73 3.0 34.3 1.0
O A:HOH304 3.1 29.8 1.0
NH2 A:ARG73 3.3 31.3 1.0
O A:HOH310 3.5 39.4 1.0
O A:ASN74 3.5 22.1 1.0
C A:ASN74 3.5 23.3 1.0
CZ A:ARG73 3.6 30.2 1.0
CA A:ASN74 3.8 21.4 1.0
CB A:ARG73 3.8 26.3 1.0
CA A:ARG73 3.9 22.6 1.0
C A:ARG73 3.9 23.6 1.0
CD2 A:LEU75 4.0 24.9 1.0
N A:LEU75 4.1 22.9 1.0
CD A:ARG73 4.1 23.0 1.0
CB A:ASN74 4.2 19.4 1.0
CA A:LEU75 4.5 19.2 1.0
CG A:ARG73 4.5 24.1 1.0
O A:HOH417 4.6 26.4 1.0
CG A:LEU75 4.8 16.8 1.0
NH1 A:ARG73 4.9 28.4 1.0
OD1 A:ASN77 4.9 27.8 1.0

Chlorine binding site 2 out of 5 in 5gwb

Go back to Chlorine Binding Sites List in 5gwb
Chlorine binding site 2 out of 5 in the Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl202

b:39.7
occ:1.00
 O A:HOH313 3.7 32.4 1.0
NZ A:LYS33 4.0 30.8 1.0
CZ3 A:TRP123 4.0 18.7 1.0
CE2 A:PHE38 4.0 18.4 1.0
CD A:ARG5 4.3 22.5 1.0
CE A:LYS33 4.5 25.1 1.0
CB A:ARG5 4.5 22.2 1.0
CD A:LYS33 4.5 19.3 1.0
CZ A:PHE38 4.6 14.9 1.0
CE3 A:TRP123 4.8 18.6 1.0
NE A:ARG5 4.8 25.0 1.0
O A:HOH404 4.8 28.4 1.0
CG A:ARG5 4.9 22.5 1.0
CH2 A:TRP123 4.9 24.0 1.0

Chlorine binding site 3 out of 5 in 5gwb

Go back to Chlorine Binding Sites List in 5gwb
Chlorine binding site 3 out of 5 in the Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection within 5.0Å range:

Chlorine binding site 4 out of 5 in 5gwb

Go back to Chlorine Binding Sites List in 5gwb
Chlorine binding site 4 out of 5 in the Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl204

b:31.4
occ:1.00
 ND2 A:ASN59 3.0 30.8 1.0
NE1 A:TRP63 3.2 20.4 1.0
CD1 A:TRP62 3.9 22.7 1.0
CD1 A:TRP63 4.0 19.0 1.0
N2 A:GAI207 4.1 22.9 1.0
CG A:ASN59 4.1 25.6 1.0
N3 A:GAI207 4.1 18.4 1.0
CE2 A:TRP63 4.2 18.4 1.0
C A:GAI207 4.3 22.2 1.0
OD1 A:ASN59 4.4 21.0 1.0
CZ2 A:TRP63 4.6 20.4 1.0
NE1 A:TRP62 4.6 26.4 1.0
CG A:TRP62 4.7 20.1 1.0
O A:ALA107 4.8 14.7 1.0
CB A:TRP62 4.9 17.8 1.0
CB A:ALA107 4.9 16.8 1.0

Chlorine binding site 5 out of 5 in 5gwb

Go back to Chlorine Binding Sites List in 5gwb
Chlorine binding site 5 out of 5 in the Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl205

b:22.7
occ:1.00
 ND2 A:ASN113 3.1 18.0 1.0
CB A:ASN113 3.6 15.5 1.0
O A:HOH369 3.6 20.1 1.0
CG A:ASN113 3.9 17.4 1.0
O A:VAL109 4.0 17.8 1.0
CA A:ALA110 4.1 13.3 1.0
CG1 A:VAL109 4.1 22.3 1.0
C A:VAL109 4.3 14.2 1.0
N A:ALA110 4.4 12.9 1.0
CD A:ARG114 4.5 19.1 1.0
CG A:ARG114 4.5 17.3 1.0
CB A:ALA110 4.7 15.8 1.0
CB A:VAL109 5.0 21.5 1.0
CA A:ASN113 5.0 13.8 1.0

Reference:

M.V.Hosur, R.M.Kini, C.Yeow. Hen Egg White Lysozyme Native Crystals Soaked For 2 Hours in Precipitant Solution Containing 1 M Guanidine Hydrochloride and 25% Glycerol, Before Data Collection To Be Published.
Page generated: Sat Dec 12 11:47:39 2020

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