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Chlorine in PDB 5h3g: Crystal Structure of Oryza Sativa Acyl-Coa-Binding Protein 1

Protein crystallography data

The structure of Crystal Structure of Oryza Sativa Acyl-Coa-Binding Protein 1, PDB code: 5h3g was solved by G.K.W.Kong, W.H.Y.Chan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.36 / 1.60
Space group P 32 2 1
Cell size a, b, c (Å), α, β, γ (°) 59.680, 59.680, 60.720, 90.00, 90.00, 120.00
R / Rfree (%) 19.1 / 23.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Oryza Sativa Acyl-Coa-Binding Protein 1 (pdb code 5h3g). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Oryza Sativa Acyl-Coa-Binding Protein 1, PDB code: 5h3g:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 5h3g

Go back to Chlorine Binding Sites List in 5h3g
Chlorine binding site 1 out of 3 in the Crystal Structure of Oryza Sativa Acyl-Coa-Binding Protein 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Oryza Sativa Acyl-Coa-Binding Protein 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl101

b:22.9
occ:1.00
OG A:SER22 3.0 18.6 1.0
O A:HOH292 3.2 29.0 1.0
N A:ASN23 3.4 16.1 1.0
CA A:SER22 3.7 13.7 1.0
CB A:SER22 3.7 13.4 1.0
C A:SER22 4.0 14.4 1.0
O A:HOH261 4.2 53.4 1.0
CB A:ASN23 4.3 16.4 1.0
CA A:ASN23 4.4 16.9 1.0
N A:GLU24 4.6 13.2 1.0
N A:SER22 4.9 12.9 1.0

Chlorine binding site 2 out of 3 in 5h3g

Go back to Chlorine Binding Sites List in 5h3g
Chlorine binding site 2 out of 3 in the Crystal Structure of Oryza Sativa Acyl-Coa-Binding Protein 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Oryza Sativa Acyl-Coa-Binding Protein 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl102

b:26.3
occ:1.00
OH A:TYR10 3.0 28.3 1.0
NZ A:LYS80 3.2 23.2 0.5
CE2 A:TYR10 3.7 19.6 1.0
CZ A:TYR10 3.8 27.1 1.0
CE A:LYS80 3.9 20.2 0.5
CD A:LYS80 4.4 14.4 0.5
OD1 A:ASP6 4.9 30.0 1.0
OD2 A:ASP6 5.0 35.8 1.0

Chlorine binding site 3 out of 3 in 5h3g

Go back to Chlorine Binding Sites List in 5h3g
Chlorine binding site 3 out of 3 in the Crystal Structure of Oryza Sativa Acyl-Coa-Binding Protein 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Oryza Sativa Acyl-Coa-Binding Protein 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl103

b:24.6
occ:1.00
NZ A:LYS34 3.0 14.6 1.0
CE A:LYS34 3.9 13.2 1.0
CH2 A:TRP60 3.9 17.6 1.0
CG2 A:VAL38 4.3 17.1 1.0
CZ3 A:TRP60 4.5 18.9 1.0
CZ2 A:TRP60 4.8 16.5 1.0
CG1 A:VAL38 4.9 15.9 1.0
CB A:VAL38 4.9 15.6 1.0

Reference:

Z.-H.Guo, W.H.Y.Chan, G.K.W.Kong, Q.Hao, M.-L.Chye. The First Plant Acyl-Coa-Binding Protein Structures: the Close Homologues OSACBP1 and OSACBP2 From Rice Acta Crystallogr D Struct V. 73 438 2017BIOL.
ISSN: ISSN 2059-7983
PubMed: 28471368
DOI: 10.1107/S2059798317004193
Page generated: Sat Dec 12 11:47:54 2020

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