Atomistry » Chlorine » PDB 5h4z-5hi4 » 5h8y
Atomistry »
  Chlorine »
    PDB 5h4z-5hi4 »
      5h8y »

Chlorine in PDB 5h8y: Crystal Structure of the Complex Between Maize Sulfite Reductase and Ferredoxin in the Form-2 Crystal

Enzymatic activity of Crystal Structure of the Complex Between Maize Sulfite Reductase and Ferredoxin in the Form-2 Crystal

All present enzymatic activity of Crystal Structure of the Complex Between Maize Sulfite Reductase and Ferredoxin in the Form-2 Crystal:
1.8.7.1;

Protein crystallography data

The structure of Crystal Structure of the Complex Between Maize Sulfite Reductase and Ferredoxin in the Form-2 Crystal, PDB code: 5h8y was solved by G.Kurisu, M.Nakayama, T.Hase, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.07 / 2.20
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 176.219, 176.219, 195.315, 90.00, 90.00, 120.00
R / Rfree (%) 21.8 / 24.7

Other elements in 5h8y:

The structure of Crystal Structure of the Complex Between Maize Sulfite Reductase and Ferredoxin in the Form-2 Crystal also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms
Iron (Fe) 24 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Complex Between Maize Sulfite Reductase and Ferredoxin in the Form-2 Crystal (pdb code 5h8y). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure of the Complex Between Maize Sulfite Reductase and Ferredoxin in the Form-2 Crystal, PDB code: 5h8y:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 5h8y

Go back to Chlorine Binding Sites List in 5h8y
Chlorine binding site 1 out of 4 in the Crystal Structure of the Complex Between Maize Sulfite Reductase and Ferredoxin in the Form-2 Crystal


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Complex Between Maize Sulfite Reductase and Ferredoxin in the Form-2 Crystal within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl704

b:34.6
occ:1.00
FE A:SRM702 2.7 23.1 1.0
NC A:SRM702 3.2 20.5 1.0
ND A:SRM702 3.4 24.8 1.0
NB A:SRM702 3.4 21.7 1.0
NZ A:LYS276 3.5 29.9 1.0
NA A:SRM702 3.6 22.5 1.0
NH1 A:ARG193 3.7 25.2 1.0
NZ A:LYS278 3.7 24.6 1.0
NH1 A:ARG124 3.7 24.4 1.0
C4B A:SRM702 3.7 21.0 1.0
CHC A:SRM702 3.8 20.3 1.0
C1C A:SRM702 3.8 19.7 1.0
NH2 A:ARG124 3.9 25.6 1.0
C4D A:SRM702 4.0 24.6 1.0
C4C A:SRM702 4.1 20.6 1.0
C1D A:SRM702 4.2 23.1 1.0
CHA A:SRM702 4.2 23.7 1.0
C1A A:SRM702 4.2 24.2 1.0
CZ A:ARG124 4.3 24.5 1.0
CE A:LYS278 4.3 22.7 1.0
C1B A:SRM702 4.4 20.6 1.0
CHD A:SRM702 4.5 21.6 1.0
C4A A:SRM702 4.6 23.1 1.0
CBB A:SRM702 4.6 23.0 1.0
CE A:LYS276 4.7 28.4 1.0
CD A:LYS276 4.7 27.5 1.0
CZ A:ARG193 4.8 25.6 1.0
C3B A:SRM702 4.8 21.0 1.0
O2B A:SRM702 4.8 22.9 1.0
C2C A:SRM702 4.9 18.8 1.0
CHB A:SRM702 5.0 21.6 1.0

Chlorine binding site 2 out of 4 in 5h8y

Go back to Chlorine Binding Sites List in 5h8y
Chlorine binding site 2 out of 4 in the Crystal Structure of the Complex Between Maize Sulfite Reductase and Ferredoxin in the Form-2 Crystal


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Complex Between Maize Sulfite Reductase and Ferredoxin in the Form-2 Crystal within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl704

b:40.2
occ:1.00
FE B:SRM702 2.9 22.4 1.0
NH1 B:ARG193 3.4 28.3 1.0
NC B:SRM702 3.4 22.2 1.0
NZ B:LYS276 3.5 29.1 1.0
ND B:SRM702 3.5 23.7 1.0
NH1 B:ARG124 3.6 25.8 1.0
NZ B:LYS278 3.7 21.4 1.0
NB B:SRM702 3.7 23.6 1.0
NA B:SRM702 3.8 22.3 1.0
NH2 B:ARG124 3.9 24.5 1.0
C1C B:SRM702 4.0 21.7 1.0
C4B B:SRM702 4.0 22.5 1.0
CHC B:SRM702 4.0 21.6 1.0
C4D B:SRM702 4.1 24.3 1.0
CZ B:ARG124 4.2 22.8 1.0
CE B:LYS278 4.2 21.1 1.0
C1D B:SRM702 4.3 24.1 1.0
C4C B:SRM702 4.3 21.6 1.0
CHA B:SRM702 4.3 23.4 1.0
C1A B:SRM702 4.4 22.7 1.0
CZ B:ARG193 4.5 26.6 1.0
CE B:LYS276 4.6 27.9 1.0
C1B B:SRM702 4.6 22.1 1.0
CD B:LYS276 4.6 26.5 1.0
CHD B:SRM702 4.7 22.9 1.0
O2B B:SRM702 4.7 25.7 1.0
C4A B:SRM702 4.7 22.6 1.0
CBB B:SRM702 4.8 26.4 1.0
NH2 B:ARG193 4.8 28.2 1.0

Chlorine binding site 3 out of 4 in 5h8y

Go back to Chlorine Binding Sites List in 5h8y
Chlorine binding site 3 out of 4 in the Crystal Structure of the Complex Between Maize Sulfite Reductase and Ferredoxin in the Form-2 Crystal


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the Complex Between Maize Sulfite Reductase and Ferredoxin in the Form-2 Crystal within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl704

b:44.9
occ:1.00
FE C:SRM702 2.7 26.1 1.0
NC C:SRM702 3.2 27.4 1.0
ND C:SRM702 3.3 30.3 1.0
NB C:SRM702 3.5 28.8 1.0
NZ C:LYS276 3.5 34.8 1.0
NA C:SRM702 3.6 28.1 1.0
NZ C:LYS278 3.7 25.9 1.0
NH1 C:ARG193 3.7 35.1 1.0
NH1 C:ARG124 3.7 30.9 1.0
C1C C:SRM702 3.7 27.3 1.0
CHC C:SRM702 3.8 28.9 1.0
C4B C:SRM702 3.8 28.0 1.0
C4D C:SRM702 3.8 30.8 1.0
NH2 C:ARG124 3.9 30.1 1.0
C4C C:SRM702 4.1 28.0 1.0
CHA C:SRM702 4.1 29.9 1.0
C1D C:SRM702 4.1 30.1 1.0
C1A C:SRM702 4.2 28.4 1.0
CZ C:ARG124 4.3 29.9 1.0
CE C:LYS278 4.3 25.1 1.0
C1B C:SRM702 4.5 27.1 1.0
CHD C:SRM702 4.5 28.6 1.0
C4A C:SRM702 4.5 26.7 1.0
CBB C:SRM702 4.7 31.9 1.0
CE C:LYS276 4.7 34.9 1.0
CD C:LYS276 4.7 33.3 1.0
O2B C:SRM702 4.8 31.0 1.0
CZ C:ARG193 4.8 35.2 1.0
C2C C:SRM702 4.9 25.9 1.0
C3B C:SRM702 4.9 28.2 1.0
C3D C:SRM702 5.0 32.5 1.0
CHB C:SRM702 5.0 25.6 1.0
SG C:CYS544 5.0 25.9 1.0

Chlorine binding site 4 out of 4 in 5h8y

Go back to Chlorine Binding Sites List in 5h8y
Chlorine binding site 4 out of 4 in the Crystal Structure of the Complex Between Maize Sulfite Reductase and Ferredoxin in the Form-2 Crystal


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of the Complex Between Maize Sulfite Reductase and Ferredoxin in the Form-2 Crystal within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl704

b:43.8
occ:1.00
FE D:SRM702 2.7 31.8 1.0
NC D:SRM702 3.2 31.6 1.0
ND D:SRM702 3.3 34.3 1.0
NB D:SRM702 3.5 31.7 1.0
NZ D:LYS276 3.5 45.4 1.0
NA D:SRM702 3.6 32.0 1.0
NH1 D:ARG193 3.6 36.9 1.0
NH1 D:ARG124 3.7 40.6 1.0
C1C D:SRM702 3.7 31.3 1.0
C4B D:SRM702 3.7 33.4 1.0
NZ D:LYS278 3.7 31.1 1.0
CHC D:SRM702 3.8 32.2 1.0
NH2 D:ARG124 3.9 38.3 1.0
C4D D:SRM702 3.9 32.8 1.0
C4C D:SRM702 4.1 31.8 1.0
CHA D:SRM702 4.1 32.4 1.0
C1D D:SRM702 4.1 34.6 1.0
C1A D:SRM702 4.2 33.0 1.0
CZ D:ARG124 4.2 39.7 1.0
CE D:LYS278 4.3 32.7 1.0
C1B D:SRM702 4.4 31.3 1.0
CHD D:SRM702 4.5 31.6 1.0
C4A D:SRM702 4.6 32.8 1.0
CE D:LYS276 4.7 41.0 1.0
CZ D:ARG193 4.7 37.5 1.0
O2B D:SRM702 4.8 37.8 1.0
CD D:LYS276 4.8 40.4 1.0
C3B D:SRM702 4.8 35.0 1.0
C2C D:SRM702 4.9 27.9 1.0
CBB D:SRM702 4.9 39.3 1.0
NH2 D:ARG193 5.0 35.1 1.0
CHB D:SRM702 5.0 32.3 1.0
C3D D:SRM702 5.0 36.0 1.0

Reference:

J.Y.Kim, M.Nakayama, H.Toyota, G.Kurisu, T.Hase. Structural and Mutational Studies of An Electron Transfer Complex of Maize Sulfite Reductase and Ferredoxin. J.Biochem. V. 160 101 2016.
ISSN: ISSN 0021-924X
PubMed: 26920048
DOI: 10.1093/JB/MVW016
Page generated: Fri Jul 26 08:45:31 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy