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Chlorine in PDB 5h9m: Crystal Structure of SIAH2 Sbd Domain

Protein crystallography data

The structure of Crystal Structure of SIAH2 Sbd Domain, PDB code: 5h9m was solved by A.Dong, Q.Zhang, J.R.Walker, C.Bountra, C.H.Arrowsmith, A.M.Edwards, Y.Tong, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.01 / 1.76
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 53.624, 68.753, 102.884, 90.00, 90.00, 90.00
R / Rfree (%) 17.8 / 22.7

Other elements in 5h9m:

The structure of Crystal Structure of SIAH2 Sbd Domain also contains other interesting chemical elements:

Zinc (Zn) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of SIAH2 Sbd Domain (pdb code 5h9m). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of SIAH2 Sbd Domain, PDB code: 5h9m:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 5h9m

Go back to Chlorine Binding Sites List in 5h9m
Chlorine binding site 1 out of 3 in the Crystal Structure of SIAH2 Sbd Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of SIAH2 Sbd Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl403

b:26.9
occ:1.00
O A:HOH581 3.0 22.7 1.0
O A:HOH572 3.1 31.0 1.0
OG A:SER167 3.2 19.9 0.5
N A:SER167 3.2 19.5 0.5
N A:SER167 3.3 19.5 0.5
O A:HOH596 3.6 41.5 1.0
CA A:TYR166 3.7 20.1 1.0
CA A:HIS284 3.7 21.1 1.0
CB A:HIS284 3.8 20.6 1.0
C A:TYR166 4.0 19.2 1.0
CB A:SER167 4.1 19.8 0.5
CA A:SER167 4.2 19.3 0.5
CB A:SER167 4.2 19.8 0.5
CB A:TYR166 4.2 20.0 1.0
CA A:SER167 4.2 19.2 0.5
OG A:SER167 4.3 20.1 0.5
O A:SER167 4.3 19.0 0.5
O A:SER167 4.3 19.0 0.5
CD2 A:TYR166 4.3 20.4 1.0
O A:ILE283 4.3 21.3 1.0
O A:HIS284 4.5 22.3 1.0
CG A:TYR166 4.5 20.1 1.0
O A:PRO165 4.5 19.1 1.0
O A:HOH585 4.5 34.8 1.0
N A:HIS284 4.6 20.4 1.0
C A:HIS284 4.6 23.0 1.0
C A:SER167 4.7 19.1 0.5
C A:SER167 4.7 19.1 0.5
C A:ILE283 4.8 19.5 1.0
N A:TYR166 4.9 20.9 1.0

Chlorine binding site 2 out of 3 in 5h9m

Go back to Chlorine Binding Sites List in 5h9m
Chlorine binding site 2 out of 3 in the Crystal Structure of SIAH2 Sbd Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of SIAH2 Sbd Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl404

b:37.5
occ:1.00
OG A:SER194 2.9 21.0 0.5
N A:SER194 3.3 19.7 0.5
N A:SER194 3.3 19.6 0.5
CB A:SER194 3.4 20.7 0.5
CB A:SER194 3.5 20.5 0.5
C A:HIS192 3.5 18.4 1.0
N A:LYS193 3.6 19.6 1.0
CA A:HIS192 3.6 17.6 1.0
OG A:SER194 3.7 20.4 0.5
O A:HOH605 3.9 27.7 1.0
CA A:SER194 3.9 20.2 0.5
CA A:SER194 3.9 20.1 0.5
O A:HIS192 4.1 17.3 1.0
CB A:HIS192 4.1 17.4 1.0
C A:LYS193 4.3 20.2 1.0
CA A:LYS193 4.5 20.7 1.0
ND1 A:HIS192 4.5 19.3 1.0
O A:ALA191 4.6 19.5 1.0
CG A:HIS192 4.8 18.8 1.0
C A:SER194 4.8 20.1 0.5
C A:SER194 4.8 20.1 0.5
N A:HIS192 4.8 16.8 1.0
N A:ILE195 4.8 19.0 1.0

Chlorine binding site 3 out of 3 in 5h9m

Go back to Chlorine Binding Sites List in 5h9m
Chlorine binding site 3 out of 3 in the Crystal Structure of SIAH2 Sbd Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of SIAH2 Sbd Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl404

b:36.7
occ:1.00
N B:GLU237 3.1 20.7 1.0
CB B:GLN236 3.7 22.7 1.0
CA B:GLN236 3.8 19.7 1.0
CB B:GLU237 3.9 23.6 1.0
CA B:GLU237 3.9 21.8 1.0
C B:GLN236 3.9 19.2 1.0
CB B:ALA215 4.1 25.9 1.0
O B:HOH627 4.2 33.1 1.0
O B:GLU237 4.3 22.5 1.0
CG B:GLU237 4.3 25.8 1.0
C B:GLU237 4.4 21.7 1.0
CA B:ALA215 4.6 24.6 1.0
N B:ALA215 4.7 25.1 1.0
CD B:GLU237 4.9 29.1 1.0
OE1 B:GLN236 4.9 33.5 1.0
CG B:GLN236 5.0 24.4 1.0

Reference:

Q.Zhang, A.Dong, J.R.Walker, C.Bountra, C.H.Arrowsmith, A.M.Edwards, Y.Tong, Structural Genomics Consortium (Sgc). Crystal Structure of SIAH2 Sbd Domain To Be Published.
Page generated: Sat Dec 12 11:48:04 2020

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