Chlorine in PDB 5ha6: Crystal Structure of Human Syncytin-1 Fusion Subunit

The structure of Crystal Structure of Human Syncytin-1 Fusion Subunit, PDB code: 5ha6 was solved by H.Aydin, J.E.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.42 / 2.00
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	48.118, 48.118, 378.911, 90.00, 90.00, 120.00
R / Rfree (%)	19.9 / 23.3

The binding sites of Chlorine atom in the Crystal Structure of Human Syncytin-1 Fusion Subunit (pdb code 5ha6). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Human Syncytin-1 Fusion Subunit, PDB code: 5ha6:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Human Syncytin-1 Fusion Subunit


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human Syncytin-1 Fusion Subunit within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl501 b:23.0 occ:0.33 HD21 A:ASN382 2.3 19.9 1.0 HA A:VAL379 3.1 22.7 1.0 ND2 A:ASN382 3.2 16.6 1.0 HB2 A:ASN382 3.4 20.7 1.0 HG12 A:VAL379 3.6 23.2 1.0 HD22 A:ASN382 3.6 19.9 1.0 HG23 A:VAL379 3.6 24.5 1.0 HG11 A:VAL379 3.6 23.2 1.0 HB3 A:ASN382 3.7 20.7 1.0 HG21 A:VAL379 3.8 24.5 1.0 CB A:ASN382 3.9 17.2 1.0 CG1 A:VAL379 4.0 19.4 1.0 CA A:VAL379 4.0 18.9 1.0 CG A:ASN382 4.0 20.7 1.0 CG2 A:VAL379 4.0 20.4 1.0 CB A:VAL379 4.2 16.9 1.0 O A:VAL379 4.4 19.4 1.0 C A:VAL379 4.7 19.9 1.0 HG13 A:VAL379 4.9 23.2 1.0 HG22 A:VAL379 5.0 24.5 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Human Syncytin-1 Fusion Subunit


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Human Syncytin-1 Fusion Subunit within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl501 b:53.0 occ:0.33 HD21 B:ASN382 2.4 92.0 1.0 HA B:VAL379 3.2 81.6 1.0 ND2 B:ASN382 3.3 76.7 1.0 HB2 B:ASN382 3.5 92.5 1.0 HB3 B:ASN382 3.7 92.5 1.0 HG11 B:VAL379 3.8 79.1 1.0 HD22 B:ASN382 3.8 92.0 1.0 HG12 B:VAL379 3.8 79.1 1.0 HG23 B:VAL379 3.9 76.9 1.0 CB B:ASN382 3.9 77.0 1.0 HG21 B:VAL379 3.9 76.9 1.0 CA B:VAL379 4.1 68.0 1.0 CG B:ASN382 4.1 78.1 1.0 CG1 B:VAL379 4.1 65.9 1.0 CG2 B:VAL379 4.2 64.1 1.0 CB B:VAL379 4.4 65.8 1.0 O B:VAL379 4.6 70.9 1.0 C B:VAL379 4.9 68.8 1.0 N B:VAL379 5.0 69.7 1.0

H.Aydin, A.Thavalingam, G.Bikopoulos, A.Sultana, J.E.Lee. Structural and Functional Characterization of the Human Syncytin 1 Fusion Protein To Be Published.