Atomistry » Chlorine » PDB 5h22-5hgk » 5hbq
Atomistry »
  Chlorine »
    PDB 5h22-5hgk »
      5hbq »

Chlorine in PDB 5hbq: C63D Mutant of the Rhodanese Domain of Ygap

Protein crystallography data

The structure of C63D Mutant of the Rhodanese Domain of Ygap, PDB code: 5hbq was solved by C.Eichmann, C.Tzitzilonis, T.Nakamura, W.Kwiatkowski, I.Maslennikov, S.Choe, S.A.Lipton, R.Riek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.00 / 1.66
Space group P 31
Cell size a, b, c (Å), α, β, γ (°) 43.896, 43.896, 52.667, 90.00, 90.00, 120.00
R / Rfree (%) 18.6 / 22.3

Other elements in 5hbq:

The structure of C63D Mutant of the Rhodanese Domain of Ygap also contains other interesting chemical elements:

Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the C63D Mutant of the Rhodanese Domain of Ygap (pdb code 5hbq). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the C63D Mutant of the Rhodanese Domain of Ygap, PDB code: 5hbq:

Chlorine binding site 1 out of 1 in 5hbq

Go back to Chlorine Binding Sites List in 5hbq
Chlorine binding site 1 out of 1 in the C63D Mutant of the Rhodanese Domain of Ygap


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of C63D Mutant of the Rhodanese Domain of Ygap within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl201

b:23.6
occ:1.00
O A:HOH385 3.2 30.5 1.0
N A:ALA65 3.2 17.0 1.0
O A:HOH354 3.2 14.2 1.0
N A:LYS67 3.5 23.3 1.0
N A:ARG68 3.5 23.5 1.0
O A:HOH388 3.6 32.1 1.0
OD2 A:ASP63 3.6 15.2 1.0
CB A:LYS67 3.7 28.3 1.0
CG A:ASP63 3.8 14.6 1.0
N A:GLY66 3.8 20.3 1.0
CB A:GLN64 3.9 15.3 1.0
CA A:ALA65 3.9 18.6 1.0
N A:GLN64 3.9 13.9 1.0
CA A:LYS67 3.9 25.5 1.0
CB A:ALA65 4.0 18.2 1.0
C A:ALA65 4.1 20.1 1.0
CA A:GLN64 4.1 15.9 1.0
C A:GLN64 4.1 15.8 1.0
CB A:ARG68 4.2 25.8 1.0
C A:LYS67 4.2 24.6 1.0
CB A:ASP63 4.3 14.7 1.0
OD1 A:ASP63 4.3 14.0 1.0
C A:GLY66 4.5 21.6 1.0
CA A:ARG68 4.5 23.1 1.0
O A:HOH397 4.7 23.9 1.0
CA A:GLY66 4.7 22.2 1.0
CG A:LYS67 4.8 30.6 1.0
C A:ASP63 4.8 13.7 1.0
O A:HOH304 4.9 28.8 1.0
O A:ALA65 5.0 20.7 1.0

Reference:

C.Eichmann, C.Tzitzilonis, T.Nakamura, W.Kwiatkowski, I.Maslennikov, S.Choe, S.A.Lipton, R.Riek. S-Nitrosylation Induces Structural and Dynamical Changes in A Rhodanese Family Protein. J.Mol.Biol. V. 428 3737 2016.
ISSN: ESSN 1089-8638
PubMed: 27473602
DOI: 10.1016/J.JMB.2016.07.010
Page generated: Sat Dec 12 11:48:11 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy