Chlorine in PDB 5hgk: Hiv-1 Ca N-Terminal Domain, Open Conformation

The structure of Hiv-1 Ca N-Terminal Domain, Open Conformation, PDB code: 5hgk was solved by D.A.Jacques, A.J.Price, L.C.James, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	128.76 / 1.76
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	43.720, 23.850, 129.549, 90.00, 96.31, 90.00
R / Rfree (%)	19 / 22.4

The binding sites of Chlorine atom in the Hiv-1 Ca N-Terminal Domain, Open Conformation (pdb code 5hgk). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Hiv-1 Ca N-Terminal Domain, Open Conformation, PDB code: 5hgk:

Chlorine binding site 1 out of 1 in the Hiv-1 Ca N-Terminal Domain, Open Conformation


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Hiv-1 Ca N-Terminal Domain, Open Conformation within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl201 b:24.7 occ:1.00 O B:HOH369 2.8 22.3 1.0 O B:HOH446 2.9 30.7 1.0 N B:GLU128 3.2 15.3 1.0 N B:GLY127 3.2 16.4 1.0 C B:PRO125 3.4 17.8 1.0 CA B:PRO125 3.4 18.2 1.0 CA B:GLY127 3.5 17.6 1.0 CG B:MET118 3.5 17.4 1.0 O B:PRO125 3.7 18.3 1.0 CE B:MET118 3.7 18.7 1.0 CG B:GLU128 3.7 21.5 1.0 CB B:PRO125 3.8 18.4 1.0 N B:VAL126 3.8 16.0 1.0 C B:GLY127 3.8 17.9 1.0 O B:HOH330 4.0 33.0 1.0 CB B:MET118 4.1 16.9 1.0 CB B:GLU128 4.2 18.8 1.0 SD B:MET118 4.2 19.4 1.0 CA B:GLU128 4.3 17.3 1.0 C B:VAL126 4.3 15.2 1.0 O B:HOH323 4.4 31.4 1.0 CA B:MET118 4.6 17.2 1.0 CA B:VAL126 4.6 16.2 1.0 CD B:GLU128 4.7 28.2 1.0 N B:PRO125 4.8 16.4 1.0 OE2 B:GLU128 4.8 32.3 1.0 O B:HOH459 4.9 39.6 1.0 O B:GLY127 5.0 17.8 1.0

D.A.Jacques, W.A.Mcewan, L.Hilditch, A.J.Price, G.J.Towers, L.C.James. Hiv-1 Uses Dynamic Capsid Pores to Import Nucleotides and Fuel Encapsidated Dna Synthesis. Nature V. 536 349 2016.
ISSN: ESSN 1476-4687
PubMed: 27509857
DOI: 10.1038/NATURE19098