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Chlorine in PDB 5hvp: Crystallographic Analysis of A Complex Between Human Immunodeficiency Virus Type 1 Protease and Acetyl-Pepstatin at 2.0-Angstroms Resolution

Protein crystallography data

The structure of Crystallographic Analysis of A Complex Between Human Immunodeficiency Virus Type 1 Protease and Acetyl-Pepstatin at 2.0-Angstroms Resolution, PDB code: 5hvp was solved by P.M.D.Fitzgerald, B.M.Mckeever, J.F.Vanmiddlesworth, J.P.Springer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.00
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 58.390, 86.700, 46.270, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystallographic Analysis of A Complex Between Human Immunodeficiency Virus Type 1 Protease and Acetyl-Pepstatin at 2.0-Angstroms Resolution (pdb code 5hvp). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystallographic Analysis of A Complex Between Human Immunodeficiency Virus Type 1 Protease and Acetyl-Pepstatin at 2.0-Angstroms Resolution, PDB code: 5hvp:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 5hvp

Go back to Chlorine Binding Sites List in 5hvp
Chlorine binding site 1 out of 2 in the Crystallographic Analysis of A Complex Between Human Immunodeficiency Virus Type 1 Protease and Acetyl-Pepstatin at 2.0-Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystallographic Analysis of A Complex Between Human Immunodeficiency Virus Type 1 Protease and Acetyl-Pepstatin at 2.0-Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl343

b:27.9
occ:1.00
ND2 A:ASN88 3.1 13.2 1.0
N A:THR74 3.2 17.5 1.0
CA A:GLY73 3.8 17.7 1.0
CB A:ASN88 3.9 12.5 1.0
OG1 A:THR74 3.9 19.0 1.0
CG A:ASN88 3.9 13.3 1.0
CB A:THR74 3.9 18.6 1.0
C A:GLY73 4.0 17.2 1.0
CA A:THR74 4.1 17.8 1.0
O A:HOH449 4.5 61.6 1.0
O A:HOH412 4.5 47.4 1.0
O A:ASN88 4.6 14.0 1.0
O A:THR74 4.8 18.1 1.0
CA A:ASN88 4.8 13.5 1.0
C A:THR74 5.0 18.1 1.0

Chlorine binding site 2 out of 2 in 5hvp

Go back to Chlorine Binding Sites List in 5hvp
Chlorine binding site 2 out of 2 in the Crystallographic Analysis of A Complex Between Human Immunodeficiency Virus Type 1 Protease and Acetyl-Pepstatin at 2.0-Angstroms Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystallographic Analysis of A Complex Between Human Immunodeficiency Virus Type 1 Protease and Acetyl-Pepstatin at 2.0-Angstroms Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl336

b:25.7
occ:1.00
O B:HOH356 2.9 31.0 1.0
N B:THR274 3.2 14.8 1.0
ND2 B:ASN288 3.3 13.0 1.0
CA B:GLY273 3.6 14.8 1.0
OG1 B:THR274 3.8 17.2 1.0
CB B:THR274 3.9 15.3 1.0
C B:GLY273 3.9 14.4 1.0
CB B:ASN288 4.0 11.7 1.0
CG B:ASN288 4.0 12.4 1.0
CA B:THR274 4.1 15.0 1.0
O B:HOH334 4.3 24.2 1.0
NE2 B:GLN292 4.4 13.5 1.0
CD2 B:LEU289 4.5 10.7 1.0
O B:ASN288 4.6 13.3 1.0
O B:THR274 4.6 16.7 1.0
O B:ILE272 4.9 15.8 1.0
N B:GLY273 4.9 14.6 1.0
C B:THR274 4.9 14.8 1.0
C B:ASN288 4.9 12.3 1.0
CA B:ASN288 5.0 11.7 1.0

Reference:

P.M.Fitzgerald, B.M.Mckeever, J.F.Vanmiddlesworth, J.P.Springer, J.C.Heimbach, C.T.Leu, W.K.Herber, R.A.Dixon, P.L.Darke. Crystallographic Analysis of A Complex Between Human Immunodeficiency Virus Type 1 Protease and Acetyl-Pepstatin at 2.0-A Resolution. J.Biol.Chem. V. 265 14209 1990.
ISSN: ISSN 0021-9258
PubMed: 2201682
Page generated: Sat Dec 12 11:49:23 2020

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